EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA20799
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA20799"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-06-21"}, {"TAG": "geo_loc_name", "VALUE": "Italy: TUSCANY"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Italia"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242430.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242430/SRR30242430.lite.1", "size": "9007918998", "date": "2024-08-14 22:49:29", "md5": "8e48d3f91c48f42c3b27985c58bc85a3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242430", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242430/SRR30242430", "size": "13286287502", "date": "2024-08-14 21:27:15", "md5": "4f63de5fc02f0c1f18e79b99df969ca6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA20799-2_S12_L002_R2_001.fastq.gz", "size": "9963228146", "date": "2024-08-14 21:22:41", "md5": "2f08309a9134401fa0f5a04f3d525091", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA20799-2_S12_L002_R1_001.fastq.gz", "size": "9730723977", "date": "2024-08-14 21:22:13", "md5": "069da1eb1bba84f8335d6bf0aabd4bf2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]