EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG01993
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG01993
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG01993"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL29"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG01993
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG01993
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01993-32a-1_S7_L004_R1_001.fastq.gz", "size": "8614550224", "date": "2024-09-10 03:59:43", "md5": "fe1142eae9f87453b4167236ba4dd760", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01993-32a-1_S7_L004_R2_001.fastq.gz", "size": "8101317281", "date": "2024-09-10 03:59:19", "md5": "03fab96ed3925a003467d5e0c1f4f5cf", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613919", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613919/SRR30613919", "size": "11333254542", "date": "2024-09-10 04:02:54", "md5": "2f1454cdb3e00137da314747b7970562", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613919.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613919/SRR30613919.lite.1", "size": "7473194790", "date": "2024-09-10 04:45:41", "md5": "b98d844e26db4202733a67d859f5a975", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]