EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02004
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02004
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02004"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL33"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-1_S19_L001_R1_001.fastq.gz", "size": "10322707426", "date": "2024-09-10 04:11:46", "md5": "594befeba66c56a049015d8d20642b2b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-1_S19_L001_R2_001.fastq.gz", "size": "10935000622", "date": "2024-09-10 04:14:46", "md5": "b5ede02d3258cd5a1246040ebec92bab", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613913", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613913/SRR30613913", "size": "14140019583", "date": "2024-09-10 04:31:23", "md5": "43aa08eb10757be92fa2c87fc74b6f64", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613913.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613913/SRR30613913.lite.1", "size": "10224950919", "date": "2024-09-10 04:45:31", "md5": "966444b0786bea38edffbfb40fde5e69", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]