EXPERIMENT_TITLE: GSM2830541: MYC primer R2 biological rep1 technical rep 2 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: MYC primer R2 biological rep1 technical rep 2 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "GTTGCACAATGGCAGAGACC"}, {"TAG": "primer_ds", "VALUE": "CTCTAAGGGCCAATTTGTATTGTG"}]
Pool_Member_@attributes_sample_title: MYC primer R2 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MYC primer R2 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-R2-MCF-R1-rep2_S86_conc_R1_001.fastq.gz", "size": "3292101", "date": "2020-03-17 00:43:08", "md5": "6eea2cb3ea3d13e1cd670bb7277be6ee", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-R2-MCF-R1-rep2_S86_conc_R2_001.fastq.gz", "size": "4431728", "date": "2020-03-17 00:53:28", "md5": "c1a8a233534fb3c7c70f8895dc93c2f9", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216928.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216928.sralite.1", "size": "3149433", "date": "2020-06-21 11:35:11", "md5": "af04c3d2d5d076344ee4fecd1414798f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216928", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216928/SRR6216928", "size": "5016597", "date": "2017-10-25 17:44:15", "md5": "e94d6e6f628d13f14e0656cba8afbf9a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]