EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04204
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04204
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04204"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST006"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-1_S9_L003_R1_001.fastq.gz", "size": "11789036930", "date": "2024-09-10 04:24:35", "md5": "29fda8092832dfda64b60d68142711bd", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-1_S9_L003_R2_001.fastq.gz", "size": "12391572527", "date": "2024-09-10 04:21:37", "md5": "3e0d205f2f23622c81edf4cbe8846777", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613831", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613831/SRR30613831", "size": "16160461742", "date": "2024-09-10 04:36:00", "md5": "551880cf41e7a4a4172dc3dbf2cd0503", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613831.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613831/SRR30613831.lite.1", "size": "11870162414", "date": "2024-09-10 04:44:26", "md5": "3840f60dfbfa8af8044f6415a0305837", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]