EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG01993
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG01993
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG01993"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL29"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG01993
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG01993
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01993-32a-1_S7_L002_R1_001.fastq.gz", "size": "8734475800", "date": "2024-09-10 04:05:43", "md5": "3019907cddca76dc28c5bd560e7c549c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01993-32a-1_S7_L002_R2_001.fastq.gz", "size": "8266380992", "date": "2024-09-10 04:07:36", "md5": "f14db848bdbf37c1efa36e4a2399eee1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613921", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613921/SRR30613921", "size": "11508368488", "date": "2024-09-10 04:13:57", "md5": "64c2621b9c05cb6271c99fed56d756af", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613921.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613921/SRR30613921.lite.1", "size": "7650360268", "date": "2024-09-10 04:45:50", "md5": "f0ddb39056450d0c6d9d67f8f2edcb6e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]