EXPERIMENT_TITLE: MEC-1R rep2 Hi-C
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal of this study is to investigate the changes between ibrutinib-resistant CLL cells and parental cells. Multi-omics were used to explore the changes of MEC-1R cells from DNA, RNA and protein levels. Hi-C, ATAC-seq, RNA-seq and TMT were performed in this project.
SAMPLE_TITLE: MEC-1R rep2 Hi-C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "not applicable"}, {"TAG": "age", "VALUE": "not applicable"}, {"TAG": "biomaterial_provider", "VALUE": "not applicable"}, {"TAG": "sex", "VALUE": "not applicable"}, {"TAG": "tissue", "VALUE": "not applicable"}, {"TAG": "cell_line", "VALUE": "MEC-1R"}, {"TAG": "treatment", "VALUE": "ibrutinib-resistant"}, {"TAG": "file1", "VALUE": "MEC1-R2_R1.fq.gz"}, {"TAG": "file2", "VALUE": "MEC1-R2_R2.fq.gz"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: MEC-1R rep2 Hi-C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MEC-1R rep2 Hi-C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15049543.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR015/15049/SRR15049543/SRR15049543.lite.1", "size": "37965575882", "date": "2022-09-09 12:55:54", "md5": "27138017c83278d68fb8d02fe2698c5e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15049543", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15049543/SRR15049543", "size": "48980590634", "date": "2021-07-07 04:53:38", "md5": "1ee5b0678aed30db9368ca384d2d322c", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1-R2_R2.fq.gz", "size": "35190006192", "date": "2021-07-07 04:45:39", "md5": "f73c455bbce3155e47192623dd83598e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1-R2_R1.fq.gz", "size": "34024790137", "date": "2021-07-07 04:41:32", "md5": "e65fd340d6d439244412391def2e1b6f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]