EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03270
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03270"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-02-21"}, {"TAG": "geo_loc_name", "VALUE": "Nigeria"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03270-2_FC1_S2_L003_R1_001.fastq.gz", "size": "17104758686", "date": "2024-08-22 00:12:22", "md5": "ca61ab1d0ce8c1d9a2479ebafb07ca73", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03270-2_FC1_S2_L003_R2_001.fastq.gz", "size": "18130180002", "date": "2024-08-22 00:11:46", "md5": "537bf16a93e0be0b68c360dee8809eb6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310809", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310809/SRR30310809", "size": "23429238694", "date": "2024-08-22 00:14:31", "md5": "50501321a798f5e7dbcd5edfcca90073", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310809.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310809/SRR30310809.lite.1", "size": "16185215298", "date": "2024-08-22 03:06:26", "md5": "64637b95aecb83257a7bc03df9484be4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]