EXPERIMENT_TITLE: GSM2830549: PVT1 primer R1 biological rep1 technical rep 2 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: PVT1 primer R1 biological rep1 technical rep 2 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "CTACTCACAGCGCATCCCTA"}, {"TAG": "primer_ds", "VALUE": "GGGGACAAAATTGGAACTTACTGG"}]
Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216936", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216936/SRR6216936", "size": "4652998", "date": "2017-10-25 17:45:01", "md5": "843799a989b2c5eddb2e80dff4a32f3a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216936.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216936.sralite.1", "size": "2778490", "date": "2020-06-14 00:18:30", "md5": "9e3bc07fe47d0e7ded0b7c2ac117d850", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R1-rep2_S134_conc_R2_001.fastq.gz", "size": "4138763", "date": "2020-03-17 02:24:22", "md5": "a30c2cce2e15332b17ee00ee79a60ce9", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R1-rep2_S134_conc_R1_001.fastq.gz", "size": "3070920", "date": "2020-03-17 01:18:04", "md5": "7f652b619b9c6893d412895e74425c20", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]