EXPERIMENT_TITLE: GSM5534674: Hi-c DND41 Control  replicate 1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Biotinylated DNA was extracted with Arima-HiC kit enrichment beads Libraries were prepared using the KAPA® Hyper Prep Kit for Illmina®
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We report chromatin organization changes in DND41 cells upon USP7 inhibitor with or without dexamethasone. DND41 cells were treated with USP7 inhibitor with or without dexamethasone. ATAC-seq were performed to detect chromatin organization change Overall design: Examination of chromatinorganization in DND41 cells
SAMPLE_TITLE: Hi-c DND41 Control replicate 1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "DND41"}, {"TAG": "cell type", "VALUE": "human T cell leukemia cells"}]
Pool_Member_@attributes_sample_title: Hi-c DND41 Control replicate 1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-c DND41 Control replicate 1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15598688.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR015/15598/SRR15598688/SRR15598688.lite.1", "size": "34922441427", "date": "2022-12-13 16:50:15", "md5": "b7f6c2f41e4c890d6ecc386acde9465d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15598688", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15598688/SRR15598688", "size": "53028035483", "date": "2021-08-24 21:49:21", "md5": "254352382128494e7665986b5003cf77", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-09-01-01_S72_L005_R2_001.fastq.gz", "size": "41056010563", "date": "2021-08-24 21:36:55", "md5": "e9c1e7ae5fcbe6bf82ad1f0b511f7ed6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-09-01-01_S72_L005_R1_001.fastq.gz", "size": "37240565726", "date": "2021-08-24 21:28:31", "md5": "43655f2c5e6d4c61f5f1a61470bb83a2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]