EXPERIMENT_TITLE: GSM7622061: intact Hi-C from Panc1 (ENCLB121IFD); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS036UTR
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS036UTR"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "Panc1"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "pancreatic carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "56 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABB"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS036UTR
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS036UTR
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419729.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR025/25419/SRR25419729/SRR25419729.lite.1", "size": "28556745969", "date": "2023-08-15 07:13:28", "md5": "6e26065607b79b6578edf13d39a09221", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419729", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419729/SRR25419729", "size": "53368143163", "date": "2023-08-10 06:39:36", "md5": "d0ddd09668c3edd28814f6fd06e2fea4", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF448RKK.fastq.gz", "size": "54385456213", "date": "2023-08-10 06:27:10", "md5": "0f0e230427049cfb53eb1215d1a5a959", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]