EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04204
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04204
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04204"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST006"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L001_R1_001.fastq.gz", "size": "15706851943", "date": "2024-09-10 04:03:33", "md5": "df110ff1027dd576a299d0a14c15e412", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L001_R2_001.fastq.gz", "size": "16699471882", "date": "2024-09-10 04:04:23", "md5": "77f929d8a3f7f57f09b21bb0fdd5c7c6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613851", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613851/SRR30613851", "size": "21690426232", "date": "2024-09-10 04:09:37", "md5": "7df20a4f259bb5eb7714aa843c38f28c", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613851.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613851/SRR30613851.lite.1", "size": "15867431132", "date": "2024-09-10 04:46:24", "md5": "b54b7db7cdcba47d99c5b8e32912c22c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]