EXPERIMENT_TITLE: HChi10006_HChi10009_NoIndex.experiment
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C libraries were prepared essentially as described previously (Fraser, Ferrai, et al. 2015, doi:10.15252/msb.20156492; Lieberman-Aiden et al. 2009, doi: 10.1126/science.1181369) with minor changes to improve the DNA yield of Hi-C products (Fraser, Williamson, et al. 2015, doi:10.1128/MMBR.00006-15).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project aims to systematically elucidate the function of long non-coding RNAs (lncRNAs) in the human genome.
SAMPLE_TITLE: Human induced pluripotent stem cells grown on feeder-free condition (Set 2), reference Hi-C sample, biol_rep3
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "sample_name", "VALUE": "F6-002-HIC-000-00003-B29C"}, {"TAG": "biological_replicate", "VALUE": "biol_rep3"}, {"TAG": "cell_line", "VALUE": "ff-iPSC"}, {"TAG": "cell_type", "VALUE": "iPSC"}, {"TAG": "cell_type_alias", "VALUE": "FF-iPSC (IMS)"}, {"TAG": "dev_stage", "VALUE": "pluripotent stem cells"}, {"TAG": "experiment_type", "VALUE": "Reference"}, {"TAG": "perturb_technology", "VALUE": "None"}, {"TAG": "run_no", "VALUE": "0"}, {"TAG": "sample_type", "VALUE": "cell culture"}, {"TAG": "sampling_type", "VALUE": "reference"}, {"TAG": "set_no", "VALUE": "2"}, {"TAG": "sex", "VALUE": "not determined"}, {"TAG": "tissue", "VALUE": "iPS cell"}]
Pool_Member_@attributes_sample_title: Human induced pluripotent stem cells grown on feeder-free condition (Set 2), reference Hi-C sample, biol_rep3
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human induced pluripotent stem cells grown on feeder-free condition (Set 2), reference Hi-C sample, biol_rep3
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "DRR283974.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/DRR000/283/DRR283974/DRR283974.lite.1", "size": "31186776838", "date": "2023-12-08 16:49:40", "md5": "726408ee5b518ca061bdfc9b74b11c80", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "DRR283974", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR283974/DRR283974", "size": "72928680936", "date": "2023-12-08 15:48:46", "md5": "cdf5de6254c9053976c55f9c05312f56", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]