EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03458
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03458"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Sierra Leone"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "SIERRA LEONE"}, {"TAG": "family_id", "VALUE": "SL52"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03458-1_S17_L004_R1_001.fastq.gz", "size": "4060804186", "date": "2024-08-14 20:59:48", "md5": "f11aaf0666181476efdda45de359fd11", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03458-1_S17_L004_R2_001.fastq.gz", "size": "4242909655", "date": "2024-08-14 20:59:57", "md5": "fdcc7fb2d0b25827a15c8f3869e76d06", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242225", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242225/SRR30242225", "size": "5578289640", "date": "2024-08-14 21:00:39", "md5": "20374b20dc2fbb64443aa019482997b2", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242225.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242225/SRR30242225.lite.1", "size": "3821398960", "date": "2024-08-14 22:42:55", "md5": "7be5acf985fcf81e6ed97b51e6ec8185", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]