EXPERIMENT_TITLE: GSM2830548: PVT1 primer R1 biological rep1 technical rep 1 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: PVT1 primer R1 biological rep1 technical rep 1 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "CTACTCACAGCGCATCCCTA"}, {"TAG": "primer_ds", "VALUE": "GGGGACAAAATTGGAACTTACTGG"}]
Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep1 technical rep 1 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep1 technical rep 1 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216935", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216935/SRR6216935", "size": "5641109", "date": "2017-10-25 17:44:54", "md5": "c7c2b7f5dd59646f539ef03ac04fd9e1", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216935.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216935.sralite.1", "size": "3352005", "date": "2020-06-14 00:18:29", "md5": "2e94d88e5544f68eac6c91658de1f70f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R1-rep1_S133_conc_R2_001.fastq.gz", "size": "4999477", "date": "2020-03-17 01:18:03", "md5": "22ae5e496579f11f0730a8b682761261", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R1-rep1_S133_conc_R1_001.fastq.gz", "size": "3761734", "date": "2020-03-17 05:14:53", "md5": "bf0a5f8299d41fac624590f4c50febe3", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]