EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00128
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00128"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-04-18"}, {"TAG": "geo_loc_name", "VALUE": "United Kingdom"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552918.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552918/SRR29552918.lite.1", "size": "9350605720", "date": "2024-06-26 08:19:18", "md5": "da8e54fe5a2d3e6ac7b7b41a39b69448", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552918", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552918/SRR29552918", "size": "14171632860", "date": "2024-06-26 07:40:46", "md5": "b722cc29b4949d71b5e20de66ad2fa18", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00128-1_FC2_S9_L004_R1_001.fastq.gz", "size": "10365068842", "date": "2024-06-26 07:38:28", "md5": "3562d5dc5a00edaad233550cc0e9216d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00128-1_FC1_S9_L004_R2_001.fastq.gz", "size": "10696122208", "date": "2024-06-26 07:38:53", "md5": "860a305d9f745629de902fd3f68e3b7f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]