EXPERIMENT_TITLE: GSM7656135: intact Hi-C from HCT116 (ENCLB432HOR); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS131GYJ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS131GYJ"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Dr. Masato Kanemaki"}, {"TAG": "treatments", "VALUE": "treatment_term_name: 5-Phenyl-1H-indole-3-acetic acid; treatment_type: chemical; duration: 6; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS131GYJ
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS131GYJ
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF700UFX.fastq.gz", "size": "92691601332", "date": "2023-08-11 02:42:40", "md5": "bd30ae9c8632de9d8caf987a99154c9e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419815", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419815/SRR25419815", "size": "73121100322", "date": "2023-08-11 03:07:56", "md5": "1a0c142c8b8e00f393fd66d5d1149a2e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419815.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419815/SRR25419815.lite.1", "size": "34368727116", "date": "2023-08-16 04:05:39", "md5": "e4370c69adc3c5056c0e488f361be1c7", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]