EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03742
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03742"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-06-21"}, {"TAG": "geo_loc_name", "VALUE": "United Kingdom"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "TELUGU INDIAN"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03742-2_S32_L003_R1_001.fastq.gz", "size": "11154764838", "date": "2024-08-14 21:26:12", "md5": "a1709d461fe1fb383b55e1dd60cfcefd", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03742-2_S32_L003_R2_001.fastq.gz", "size": "11275197535", "date": "2024-08-14 21:26:39", "md5": "920955c1ec51a270e97b9e24118f2c0d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242328", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242328/SRR30242328", "size": "15153084395", "date": "2024-08-14 21:30:09", "md5": "d16be95833cbe9bbc728016329769553", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242328.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242328/SRR30242328.lite.1", "size": "10635316359", "date": "2024-08-14 22:48:50", "md5": "9a549c7984f1685364462ea24f610a0d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]