EXPERIMENT_TITLE: GSM7622058: intact Hi-C from activated T-helper 2 cell (ENCLB988VJC); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS408YDW
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS408YDW"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "activated T-helper 2 cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "35 year"}, {"TAG": "donor ID", "VALUE": "ENCDO374BBL"}, {"TAG": "lab", "VALUE": "Charles Lee"}, {"TAG": "source", "VALUE": "AllCells"}, {"TAG": "treatments", "VALUE": "treatment_term_name: Interferon-gamma antibody; treatment_type: antibody; duration: 36; duration_units: hour; treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 24; duration_units: hour; treatment_term_id: UniProtKB:P60568; treatment_term_name: Interleukin-2; treatment_type: protein; duration: 14; duration_units: day; treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 14; duration_units: day; treatment_term_id: UniProtKB:P05112; treatment_term_name: Interleukin-4; treatment_type: protein; duration: 36; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS408YDW
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS408YDW
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419726.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-3/SRR025/25419/SRR25419726/SRR25419726.lite.1", "size": "90163613241", "date": "2023-08-31 10:14:03", "md5": "fb079d5f99543318dabb6e9f52a1d0bc", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419726", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419726/SRR25419726", "size": "217402657117", "date": "2023-08-26 07:38:44", "md5": "2ed9a6dc446211e06d1892ed769dfa33", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF255GXW.fastq.gz", "size": "185402737267", "date": "2023-08-26 06:32:22", "md5": "ed69f2d4787bc2561f38427290373106", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]