EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA19468
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA19468"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Kenya: WEBUYE"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "LUHYA"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19468-1_S21_L002_R1_001.fastq.gz", "size": "6894673266", "date": "2024-08-14 21:26:59", "md5": "05c696815e40b99da5c5603a6f4d25d1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19468-1_S21_L002_R2_001.fastq.gz", "size": "7233297114", "date": "2024-08-14 21:30:26", "md5": "c697157cb1b5921cebdfb01cd320b1a1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242289", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242289/SRR30242289", "size": "9530030292", "date": "2024-08-14 21:42:35", "md5": "a1a2ec826416683ed70d4d07bbdeee06", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242289.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242289/SRR30242289.lite.1", "size": "6492511144", "date": "2024-08-14 22:44:18", "md5": "72ba3a65f7ab5965dc1d43c3e181034a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]