EXPERIMENT_TITLE: GSM7611228: intact Hi-C from CD8-positive, alpha-beta T cell (ENCLB239ZGG); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS651TFQ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS651TFQ"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "CD8-positive, alpha-beta T cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "21 year"}, {"TAG": "donor ID", "VALUE": "ENCDO781BMZ"}, {"TAG": "lab", "VALUE": "Yijun Ruan, JAX"}, {"TAG": "source", "VALUE": "AllCells"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS651TFQ
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419627", "SUBMITTER_ID": "GSM7611228_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417405", "EXTERNAL_ID": "SAMN35124134"}, "@attributes": {"member_name": "", "accession": "SRS18417405", "sample_name": "ENCODE biosample ENCBS651TFQ", "sample_title": "ENCODE biosample ENCBS651TFQ", "spots": "801834779", "bases": "177371059131", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419627.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419627/SRR25419627.lite.1", "size": "53714793469", "date": "2023-08-12 09:17:19", "md5": "93b26d4edfe0d1d12b0bc535775edbd0", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419627", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419627/SRR25419627", "size": "116413874803", "date": "2023-08-07 07:24:11", "md5": "21c50697598bb238e347038b75822168", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF886TGM.fastq.gz", "url": "https://sra-pub-src-2.s3.amazonaws.com/SRR25419627/ENCFF886TGM.fastq.gz.1", "size": "147033854469", "date": "2023-08-07 06:53:26", "md5": "59ea9a314aacad0643995f9875783f3b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7611228_r1", "accession": "SRR25419627", "total_spots": "801834779", "total_bases": "177371059131", "size": "116413872941", "load_done": "true", "published": "2023-08-07 07:25:20", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419628", "SUBMITTER_ID": "GSM7611228_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417405", "EXTERNAL_ID": "SAMN35124134"}, "@attributes": {"member_name": "", "accession": "SRS18417405", "sample_name": "ENCODE biosample ENCBS651TFQ", "sample_title": "ENCODE biosample ENCBS651TFQ", "spots": "439372691", "bases": "104104195221", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF335PIZ.fastq.gz", "size": "74136411884", "date": "2023-08-07 01:45:04", "md5": "8a71a5ce6b59085195c5553e4d357193", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419628", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419628/SRR25419628", "size": "70211984778", "date": "2023-08-07 02:10:29", "md5": "74e48607d1ef1352c9364f01b3bd367a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419628.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419628/SRR25419628.lite.1", "size": "31349990251", "date": "2023-08-12 04:50:59", "md5": "d428355f5e70e7855968da05ba141d51", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "439372691"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "104104195221"}}, "@attributes": {"alias": "GSM7611228_r2", "accession": "SRR25419628", "total_spots": "439372691", "total_bases": "104104195221", "size": "70211982920", "load_done": "true", "published": "2023-08-07 02:46:14", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]