EXPERIMENT_TITLE: Hi-C of homo sapiens: glioma cell U251
STUDY_DESCRIPTOR_STUDY_ABSTRACT: RNA-seq, Hi-C, Capture Hi-C between DMSO-treated U251 and TMZ-treated U251
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "U251 cell line"}, {"TAG": "age", "VALUE": "unknown"}, {"TAG": "biomaterial_provider", "VALUE": "Wange Lu"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "brain tumor"}, {"TAG": "cell_line", "VALUE": "U251 cell line"}, {"TAG": "cell_subtype", "VALUE": "adult brain tumor"}, {"TAG": "sample_type", "VALUE": "DMSO_U251 Hi-C part 1"}, {"TAG": "treatment", "VALUE": "DMSO treated"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: DMSO_U251 Hi-C part 1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: DMSO_U251 Hi-C part 1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8446745", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8446745/SRR8446745", "size": "6687044155", "date": "2019-01-16 02:23:57", "md5": "56d365fea2a6a8358e30a7e8c7d72ac9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8446745.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR008/446/SRR8446745/SRR8446745.sralite.1", "size": "4156423303", "date": "2020-06-21 15:05:44", "md5": "bec7af2aff1b45ab2f049f85243d59cf", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FCHHNLWCCXY_L5_CWHPE18020033_R2.fastq.gz", "size": "4880985731", "date": "2020-02-06 00:14:22", "md5": "eb41fb39c01ea1bb5d4783e097171aa0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FCHHNLWCCXY_L5_CWHPE18020033_R1.fastq.gz", "size": "4285434497", "date": "2020-02-06 00:56:59", "md5": "612b97c287aff63053ed453c70e97c6a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]