EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04204
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04204
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04204"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST006"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L004_R1_001.fastq.gz", "size": "15437937941", "date": "2024-09-10 04:31:56", "md5": "653c35f5752835d1ef10dbab867dc50d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L004_R2_001.fastq.gz", "size": "16102251364", "date": "2024-09-10 04:30:28", "md5": "d959a8357bb9f149a50424f2daecb4de", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613596", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613596/SRR30613596", "size": "21110719398", "date": "2024-09-10 04:36:41", "md5": "035b8aced0f18ceaf6d71e3982da6017", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613596.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613596/SRR30613596.lite.1", "size": "15367261866", "date": "2024-09-10 06:34:58", "md5": "54649414b45c549fd51927d4421cddd6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]