EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA19443
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA19443"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-04-18"}, {"TAG": "geo_loc_name", "VALUE": "Kenya"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19443-2_FC1_S14_L003_R1_001.fastq.gz", "size": "10175867979", "date": "2024-08-21 23:24:40", "md5": "63055336e83671d937b6009a64a3a45b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19443-2_FC1_S14_L003_R2_001.fastq.gz", "size": "10675017256", "date": "2024-08-21 23:22:21", "md5": "6f23a6cd3cbb550536483f6f0f83be6a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310908", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310908/SRR30310908", "size": "13853505713", "date": "2024-08-21 23:30:15", "md5": "81a2f74fb509cb5c40fde2bcf2405d43", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310908.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310908/SRR30310908.lite.1", "size": "9688136257", "date": "2024-08-22 03:04:12", "md5": "08d26153942705387462913710cc673a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]