EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02809
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02809
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02809"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Gambian in Western Division, The Gambia - Mandinka"}, {"TAG": "family id", "VALUE": "GB63"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-2_S4_L003_R1_001.fastq.gz", "size": "21663407413", "date": "2024-09-10 04:54:56", "md5": "7a6b92d59da059aea48742ea18a76d43", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-2_S4_L003_R2_001.fastq.gz", "size": "24503334883", "date": "2024-09-10 05:05:08", "md5": "6d9154a1eea37c3c0b1c3cd7323e7636", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613623", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613623/SRR30613623", "size": "31255992713", "date": "2024-09-10 05:32:23", "md5": "5f9ef4b47529a7f9fd6d5f3c794cfe94", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613623.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613623/SRR30613623.lite.1", "size": "21446781469", "date": "2024-09-10 06:29:57", "md5": "385607f4dac55b35de402cb28f55b875", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]