EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02809
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02809
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02809"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Gambian in Western Division, The Gambia - Mandinka"}, {"TAG": "family id", "VALUE": "GB63"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-1_S3_L002_R1_001.fastq.gz", "size": "22355248007", "date": "2024-09-10 05:09:35", "md5": "e65bdec1c7f9e7a0f93c8df877d13e5b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-1_S3_L002_R2_001.fastq.gz", "size": "26373984106", "date": "2024-09-10 05:04:12", "md5": "1a974cb77c98d07afdd45bcd41127f61", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613762", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613762/SRR30613762", "size": "33100699669", "date": "2024-09-10 05:28:21", "md5": "36a441597c58b97dbec265a3a229720b", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613762.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613762/SRR30613762.lite.1", "size": "22341472701", "date": "2024-09-10 06:30:02", "md5": "685f71e183aa14b4fbae124c59da8d8a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]