EXPERIMENT_TITLE: GSM7042527: C666-1_Hi-C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We analyzed the compartment status and chromatin interactions in nasopharyngeal epithelial cell lines and nasopharyngeal carcinoma cell lines by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C.
SAMPLE_TITLE: C666-1_Hi-C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "EBV(+) nasopharyngeal carcinoma cell lines"}, {"TAG": "cell type", "VALUE": "EBV(+) nasopharyngeal carcinoma cell lines"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}, {"TAG": "geo_loc_name", "VALUE": "missing"}, {"TAG": "collection_date", "VALUE": "missing"}]
Pool_Member_@attributes_sample_title: C666-1_Hi-C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: C666-1_Hi-C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "C666-1_Hi-C_R1.fastq.gz", "size": "8941935840", "date": "2023-02-14 01:00:04", "md5": "0cc57e96827ff3aa7df726493a6025f4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "C666-1_Hi-C_R2.fastq.gz", "size": "9756886083", "date": "2023-02-14 01:00:34", "md5": "bf26c94115c2bd843374b8ee958ca1a6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR23448754", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR23448754/SRR23448754", "size": "10245247749", "date": "2023-02-14 01:01:47", "md5": "dff9df65a89c6a4197d95be827c80fdc", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR23448754.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR023/23448/SRR23448754/SRR23448754.lite.1", "size": "8132371769", "date": "2023-05-08 11:42:46", "md5": "3924a73f3d3e715cea537f863831c990", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]