EXPERIMENT_TITLE: GSM6070228: MP46_rep1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Genomic DNA was prepared according the protocol published by Rao et al. Cell 2014)
STUDY_DESCRIPTOR_STUDY_ABSTRACT: To elucidate if regulation of gene expression could be linked to chromatin organization and DNA folding, we investigated the chromatin structure and DNA topology of two uveal melanoma models. Overall design: The HiC dataset was composed of  several biological replicates of Uveal Melanoma models:  MP41 and MP46
SAMPLE_TITLE: MP46_rep1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "PDX of uveal melanoma"}, {"TAG": "tissue", "VALUE": "PDX of uveal melanoma"}, {"TAG": "cell line", "VALUE": "MP46"}, {"TAG": "cell type", "VALUE": "UM sorted cells"}, {"TAG": "geo_loc_name", "VALUE": "missing"}, {"TAG": "collection_date", "VALUE": "missing"}]
Pool_Member_@attributes_sample_title: MP46_rep1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MP46_rep1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "A476-A479-A480F5.R1.fastq.gz", "size": "10472873269", "date": "2022-04-27 18:27:47", "md5": "276b64d0db7ee5846ea4a468447a5272", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "A476-A479-A480F5.R2.fastq.gz", "size": "11247999229", "date": "2022-04-27 18:30:01", "md5": "28b01687177a63d163b5acf7109a1534", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR18944284", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR18944284/SRR18944284", "size": "16039678908", "date": "2022-04-27 18:49:23", "md5": "dedfa2286b386896a06835804020b9a5", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR18944284.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR018/18944/SRR18944284/SRR18944284.lite.1", "size": "8538251652", "date": "2022-10-24 23:59:48", "md5": "eeb2935441d2f11301d47cdfc317b5ac", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]