EXPERIMENT_TITLE: GSM7622045: intact Hi-C from Caco-2 (ENCLB173OXL); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS022WBK
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS022WBK"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "Caco-2"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal adenocarcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "72 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ACR"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS022WBK
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS022WBK
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF298LCI.fastq.gz", "size": "211622340177", "date": "2023-08-12 18:54:57", "md5": "ee33accc57765fcb526bb1244dbfba9f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419709", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419709/SRR25419709", "size": "165018398885", "date": "2023-08-12 19:42:12", "md5": "0fc3764b51709cc3ca2b5bfc3e2760e8", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419709.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419709/SRR25419709.lite.1", "size": "81210100963", "date": "2023-08-18 00:15:55", "md5": "248d4b7a9a7c046df9d1cd9bddf4f7d6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]