EXPERIMENT_TITLE: Region Capture HiC Imprinted Gene Panel
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We have set up a Region Capture HiC panel for the following human imprinted gene loci in chromosomes: 1 (DIRAS3, 4.4 Mb), 14 (DLK1, 2.8 Mb), 15 (SNRPN, 1.6 Mb), 11 (IGF2-H19, 1.3 Mb), and 8 (PEG13, 0.8 Mb). 11 non-imprinted loci were also included as control loci. Probes were designed to tile the regions and were purchased from Agilent. HiC capture was performed using restriction enzyme MboI. Two biological replicates of the 1-7HB2 human mammary epithelial cell line, WT1 and WT2, were sequenced using HiSeq 50bp Paired End sequencing on an Illumina HiSeq 2500 at the Babraham Institute in Cambridge, UK. Coordinates for all loci are available under Design Description in Experiment Accession.
SAMPLE_TITLE: HB2_WT2
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "10081201"}, {"TAG": "age", "VALUE": "Age unspecified"}, {"TAG": "biomaterial_provider", "VALUE": "European Collection of Authenticated Cell Cultures (ECACC)"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "Human breast"}, {"TAG": "cell_line", "VALUE": "1-7HB2"}, {"TAG": "cell_subtype", "VALUE": "Cuboidal"}, {"TAG": "cell_type", "VALUE": "Human mammary epithelial cell"}, {"TAG": "culture_collection", "VALUE": "ECACC:10081201"}, {"TAG": "disease", "VALUE": "Breast cancer"}, {"TAG": "Replicate", "VALUE": "Biological replicate 2"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: HB2_WT2
RUN_SET_RUN_Pool_Member_@attributes_sample_title: HB2_WT2
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