EXPERIMENT_TITLE: HiC of Homo sapiens: adult female cervix
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We presented a multi-omics dataset of SiHa cell line with eligible quality, including genome (whole exome sequencing, WES), epigenome (Hi-C and ATAC-seq) and transcriptome (RNA-s¬eq), which may shed lights on the complex cellular programs in SiHa cells and further promote researches into cervical cancer treatments
SAMPLE_TITLE: Human sample from Homo sapiens
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "Grade II,squamous cell carcinoma"}, {"TAG": "age", "VALUE": "55"}, {"TAG": "biomaterial_provider", "VALUE": "ATCC"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "cervix"}, {"TAG": "cell_line", "VALUE": "SiHa"}, {"TAG": "cell_type", "VALUE": "Epithelial cell"}, {"TAG": "disease", "VALUE": "Grade II,squamous cell carcinoma"}, {"TAG": "ethnicity", "VALUE": "Asian"}, {"TAG": "sample_type", "VALUE": "cell culture"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample from Homo sapiens
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample from Homo sapiens
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HiC_Siha_R1.fastq.gz.gz", "size": "51816305694", "date": "2019-10-02 10:28:18", "md5": "364cb2f9f4a32a1f8a41173dbcf78639", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HiC_Siha_R2.fastq.gz.gz", "size": "53341203460", "date": "2019-10-02 10:05:01", "md5": "742424f963c6361bf6340992d828c621", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR10214691.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR010/214/SRR10214691/SRR10214691.lite.1", "size": "55284726095", "date": "2022-06-11 01:47:28", "md5": "adc7bf3f26286fde5570276fbe28121d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR10214691", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10214691/SRR10214691", "size": "67842686383", "date": "2019-10-02 11:48:56", "md5": "b677a007efa3a39465450187b92d7208", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]