EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00706
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00706"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2020-12-08"}, {"TAG": "geo_loc_name", "VALUE": "China: Hu Nan Province"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Southern Han Chinese"}, {"TAG": "family_id", "VALUE": "SH090"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00706-30b-1_S7_L002_R1_001.fastq.gz", "size": "16024967457", "date": "2024-09-10 04:07:22", "md5": "521d9c5316023989afc5ced4c2ef5714", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00706-30b-1_S7_L002_R2_001.fastq.gz", "size": "16280425004", "date": "2024-09-10 04:06:39", "md5": "ff6fd4fddf90b05ca11d60c196a11b97", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613586", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613586/SRR30613586", "size": "21847017780", "date": "2024-09-10 04:10:41", "md5": "94e63cfd4b2017c13b4305df1623e79f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613586.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613586/SRR30613586.lite.1", "size": "16108601104", "date": "2024-09-10 04:42:07", "md5": "cdf78a22f5962b002c8796315b4b947b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]