EXPERIMENT_TITLE: Hi-C of BSA control stimulated HMC3 cells
STUDY_DESCRIPTOR_STUDY_ABSTRACT: HIV infection in the brain is linked to inflammation and activation of interferon signaling. To study the impact this has on microglia genome structure and function, we performed in situ Hi-C in interferon-gamma stimulated and unstimulated microglial cells. We also performed HIV integration site sequencing to determine how changes in genome structure relate to HIV integration.
SAMPLE_TITLE: in situ Hi-C of BSA control stimulated HMC3 cells replicate 3
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA"}, {"TAG": "age", "VALUE": "NA"}, {"TAG": "biomaterial_provider", "VALUE": "NA"}, {"TAG": "sex", "VALUE": "NA"}, {"TAG": "tissue", "VALUE": "NA"}, {"TAG": "cell_line", "VALUE": "HMC3"}, {"TAG": "cell_type", "VALUE": "Human microglial"}, {"TAG": "sample_type", "VALUE": "Cell culture"}, {"TAG": "treatment", "VALUE": "BSA"}, {"TAG": "replicate", "VALUE": "3"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: in situ Hi-C of BSA control stimulated HMC3 cells replicate 3
RUN_SET_RUN_Pool_Member_@attributes_sample_title: in situ Hi-C of BSA control stimulated HMC3 cells replicate 3
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