EXPERIMENT_TITLE: GSM7622053: intact Hi-C from T-helper 2 cell (ENCLB197KAQ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS222HMB
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS222HMB"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "T-helper 2 cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "35 year"}, {"TAG": "donor ID", "VALUE": "ENCDO374BBL"}, {"TAG": "lab", "VALUE": "Charles Lee"}, {"TAG": "source", "VALUE": "AllCells"}, {"TAG": "treatments", "VALUE": "treatment_term_id: UniProtKB:P05112; treatment_term_name: Interleukin-4; treatment_type: protein; duration: 36; duration_units: hour; treatment_term_name: Interferon-gamma antibody; treatment_type: antibody; duration: 36; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS222HMB
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419719", "SUBMITTER_ID": "GSM7622053_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417428", "EXTERNAL_ID": "SAMN35124123"}, "@attributes": {"member_name": "", "accession": "SRS18417428", "sample_name": "ENCODE biosample ENCBS222HMB", "sample_title": "ENCODE biosample ENCBS222HMB", "spots": "964912396", "bases": "271232640498", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419719.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR025/25419/SRR25419719/SRR25419719.lite.1", "size": "81073109947", "date": "2023-08-18 07:29:28", "md5": "87e4b06853fedc9fcb5c9a698b121cfe", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419719", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419719/SRR25419719", "size": "195240082664", "date": "2023-08-13 04:36:18", "md5": "4f817222fb7954747692c621e19598ae", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF910AGM.fastq.gz", "size": "166592600882", "date": "2023-08-13 03:33:06", "md5": "5ff800425d38f4c128b5ad1b06f65bef", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7622053_r1", "accession": "SRR25419719", "total_spots": "964912396", "total_bases": "271232640498", "size": "195240080801", "load_done": "true", "published": "2023-08-13 04:39:18", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419720", "SUBMITTER_ID": "GSM7622053_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417428", "EXTERNAL_ID": "SAMN35124123"}, "@attributes": {"member_name": "", "accession": "SRS18417428", "sample_name": "ENCODE biosample ENCBS222HMB", "sample_title": "ENCODE biosample ENCBS222HMB", "spots": "612262028", "bases": "177377765385", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419720.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419720/SRR25419720.lite.1", "size": "52349208450", "date": "2023-08-17 18:30:56", "md5": "77ebeea08e3cbbe6d2275fd036e60821", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419720", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419720/SRR25419720", "size": "118537885918", "date": "2023-08-12 15:30:17", "md5": "8f9c53c2dce2bd920393607f42bcbeac", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF801QXG.fastq.gz", "size": "98273324768", "date": "2023-08-12 15:14:08", "md5": "f8039f775a5d6ceec8a52a9cf8e66f7f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7622053_r2", "accession": "SRR25419720", "total_spots": "612262028", "total_bases": "177377765385", "size": "118537884057", "load_done": "true", "published": "2023-08-12 15:46:59", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]