EXPERIMENT_TITLE: GSM3612254: PMA 1.1_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: PMA 1.1_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: PMA 1.1_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PMA 1.1_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_PMA_1_R2.fastq.gz", "size": "1402546950", "date": "2020-03-10 15:38:33", "md5": "16ac94c6250680101c7cb355aba89fcc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591512", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591512/SRR8591512", "size": "1874835817", "date": "2019-02-19 13:23:14", "md5": "7f94a1b72e90d2ce1906f7936dac7172", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591512.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR008/591/SRR8591512.sralite.1", "size": "1112361173", "date": "2020-06-20 04:57:42", "md5": "8052576e936d781293d8d8902a5405b9", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_PMA_1_R1.fastq.gz", "size": "1197544625", "date": "2020-03-10 08:34:23", "md5": "0113d2749b2a1f6eb7a1c1543a840e6e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]