EXPERIMENT_TITLE: GSM4206396: Choudhary-2018-TW_HIC218; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) in situ HiC, in situ HiC^2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Co-option of transposable elements maintains conserved 3D genome structures via CTCF binding site turnover in human and mouse. Overall design: in situ HiC and in situ Hybrid-capture HiC (HiC^2) were generated for L1M3f-del and LTR41-del GM12878 cell lines
SAMPLE_TITLE: Choudhary-2018-TW_HIC218
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "GM12878 cell line"}, {"TAG": "strain", "VALUE": "LTR41 deletion"}, {"TAG": "gender", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "blood lymphoblastoid"}]
Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC218
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC218
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC218_R1.fastq.gz", "size": "5373347413", "date": "2019-12-06 07:24:17", "md5": "34cc38b816c8882cd3fe3aac05f4037d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC218_R2.fastq.gz", "size": "5481470500", "date": "2019-12-06 07:26:22", "md5": "e44d58a003de125427292495fef55d2e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR10597525", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10597525/SRR10597525", "size": "6387470222", "date": "2019-12-06 07:29:08", "md5": "b40f08c810c3fb6d07ceb2cc4482a53d", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR10597525.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR010/597/SRR10597525.sralite.1", "size": "4248998558", "date": "2020-06-21 14:03:15", "md5": "e109e2289c1ca881b578a820a35ade57", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]