EXPERIMENT_TITLE: GSM7610360: intact Hi-C from IMR-90 (ENCLB283QJD); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS299KRY
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS299KRY"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "IMR-90"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "unknown"}, {"TAG": "dev_stage", "VALUE": "embryonic"}, {"TAG": "age", "VALUE": "16 week"}, {"TAG": "donor ID", "VALUE": "ENCDO000AAX"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS299KRY
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS299KRY
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF137SPI.fastq.gz", "size": "64380657528", "date": "2023-08-07 14:45:50", "md5": "c208f2b52451152b49b634484aef3e80", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419522", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419522/SRR25419522", "size": "51536812738", "date": "2023-08-07 14:58:12", "md5": "2f16708f521ceffbd99747957c618e97", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419522.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419522/SRR25419522.lite.1", "size": "28714544702", "date": "2023-08-12 16:12:19", "md5": "d271b212c6c5c4a16f8516760dd6d51e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]