EXPERIMENT_TITLE: Illumina NovaSeq 6000 sequencing; Raw reads: HG00864
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Identifying and cataloging the occurrence of structural variants (SVs)—including deletions, insertions,duplications, and inversions—in human chromosomes, comprehensive SV discovery in human chromosomes by combiningmultiple cutting-edge genome-analyzing technologies and computational tools to generate a novel SV referenceset encompassing ethnically diverse populations, which will serve as a valuable resource to clinicians andresearchers who investigate the causes of genetic diseases.
SAMPLE_TITLE: Coriell HG00864
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "Chinese_Code", "VALUE": "1000429"}, {"TAG": "Super Population Code", "VALUE": "EAS"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "DNA-ID", "VALUE": "HG00864"}, {"TAG": "population", "VALUE": "CDX"}, {"TAG": "family_id", "VALUE": "D58"}, {"TAG": "relationship_type", "VALUE": "unrelated"}, {"TAG": "culture_collection", "VALUE": "Coriell:HG00864"}, {"TAG": "Super Population Description", "VALUE": "East Asian"}, {"TAG": "Population Description", "VALUE": "Chinese Dai - Xishuangbanna, China"}, {"TAG": "Coriell panel", "VALUE": "MGP00012"}]
Pool_Member_@attributes_sample_title: Coriell HG00864
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Coriell HG00864
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00864_GCAATTCC-CCACAACA_HF35FDSXY_L002_001.R1.fastq.gz", "size": "28457428760", "date": "2022-07-14 03:52:13", "md5": "2d62410963332d99304c6f240817a29c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ERR4501100", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/ERR4501100/ERR4501100", "size": "18329501018", "date": "2022-07-14 04:35:20", "md5": "634434c6a89ec55bc482923a7a546b3c", "version": "2", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "ERR4501100.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/ERR004/4501/ERR4501100/ERR4501100.lite.1", "size": "13546034690", "date": "2022-08-12 18:31:23", "md5": "6d732715f63a4d1affde4d404dd4a4da", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]