EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03470
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03470"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Sierra Leone"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "SIERRA LEONE"}, {"TAG": "family_id", "VALUE": "SL56"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-2_S26_L001_R1_001.fastq.gz", "size": "5320085257", "date": "2024-08-14 21:00:30", "md5": "596033279ab0b5cc93f36c67b14dbcee", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-2_S26_L001_R2_001.fastq.gz", "size": "5527264245", "date": "2024-08-14 21:00:42", "md5": "79dcadca89fc3be9ba2c994dd61031f2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242317", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242317/SRR30242317", "size": "7319542909", "date": "2024-08-14 21:01:29", "md5": "68bd9a399dd994b03b585f5d0411bb8b", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242317.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242317/SRR30242317.lite.1", "size": "4974282545", "date": "2024-08-14 22:45:02", "md5": "3669a0e9d61f67076458fb3af8d756b1", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]