EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04228
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04228
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04228"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST232"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04228
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04228
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04228-22e-2_S12_L004_R1_001.fastq.gz", "size": "14102590133", "date": "2024-09-10 04:23:54", "md5": "5c37c4ee78abc3199d7c2eccc931a9ee", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04228-22e-2_S12_L004_R2_001.fastq.gz", "size": "14844874159", "date": "2024-09-10 04:24:43", "md5": "75d4357a794c090ca013ba70061108d3", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613842", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613842/SRR30613842", "size": "19336590770", "date": "2024-09-10 04:31:51", "md5": "06972009dc0e42aa99f600ac49f875b6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613842.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613842/SRR30613842.lite.1", "size": "14009543478", "date": "2024-09-10 04:49:25", "md5": "193a9f219cd201fbd6539c15b0007df1", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]