EXPERIMENT_TITLE: GSM2824366: Hi-C from astrocyte of the cerebellum (ENCLB174TEA); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: not provided
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors.  For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.
SAMPLE_TITLE: ENCODE biosample ENCBS115FPY: astrocytes-cerebellar
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "sex", "VALUE": "not collected"}, {"TAG": "cell type", "VALUE": "astrocyte of the cerebellum"}, {"TAG": "lab", "VALUE": "John Stamatoyannopoulos, UW"}, {"TAG": "sample_type", "VALUE": "primary cell"}, {"TAG": "health state", "VALUE": "unknown"}, {"TAG": "age", "VALUE": "unknown"}, {"TAG": "donor ID", "VALUE": "ENCDO227AAA"}, {"TAG": "dev_stage", "VALUE": "unknown"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS115FPY: astrocytes-cerebellar
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS115FPY: astrocytes-cerebellar
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF351LZW.fastq.gz", "size": "11576284633", "date": "2020-03-19 15:33:00", "md5": "5adf831d2c903b5f66558e5db1292d59", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF608DSE.fastq.gz", "size": "11154172828", "date": "2020-03-19 11:30:45", "md5": "442a1b1e0a222b4d4147a5e73d98c524", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6212884.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/212/SRR6212884.sralite.1", "size": "9013213691", "date": "2020-06-21 23:06:41", "md5": "514a9dc37fbcfccae05911d01352fdcf", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6212884", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6212884/SRR6212884", "size": "13637373231", "date": "2017-10-25 01:58:26", "md5": "8c4d0f1551ad334258600851be94504f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]