EXPERIMENT_TITLE: GSM5534681: Hi-c DND41 USP7i+dexamethasone  replicate 2; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Biotinylated DNA was extracted with Arima-HiC kit enrichment beads Libraries were prepared using the KAPA® Hyper Prep Kit for Illmina®
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We report chromatin organization changes in DND41 cells upon USP7 inhibitor with or without dexamethasone. DND41 cells were treated with USP7 inhibitor with or without dexamethasone. ATAC-seq were performed to detect chromatin organization change Overall design: Examination of chromatinorganization in DND41 cells
SAMPLE_TITLE: Hi-c DND41 USP7i+dexamethasone replicate 2
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "DND41"}, {"TAG": "cell type", "VALUE": "human T cell leukemia cells"}]
Pool_Member_@attributes_sample_title: Hi-c DND41 USP7i+dexamethasone replicate 2
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-c DND41 USP7i+dexamethasone replicate 2
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15598695.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR015/15598/SRR15598695/SRR15598695.lite.1", "size": "36642705762", "date": "2022-12-13 16:51:24", "md5": "397bb9d25642145c952cc6664696a2cc", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15598695", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15598695/SRR15598695", "size": "55455430762", "date": "2021-08-24 21:39:03", "md5": "ad21b9cee963847aa54ab04169420cab", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-11-04_S95_L007_R2_001.fastq.gz", "size": "42969163706", "date": "2021-08-24 21:15:10", "md5": "d6717e00b9c1095c4cb26687a3041ebb", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-11-04_S95_L007_R1_001.fastq.gz", "size": "38815946145", "date": "2021-08-24 20:58:00", "md5": "b5db806410097cf2cb2a7002e360b2ca", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]