EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04228
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04228
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04228"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST232"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04228
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04228
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04228-22e-2_S12_L001_R1_001.fastq.gz", "size": "14466872262", "date": "2024-09-10 04:03:12", "md5": "752f9f7c12c728dcd45ef72d95723dbc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04228-22e-2_S12_L001_R2_001.fastq.gz", "size": "15521157116", "date": "2024-09-10 04:02:31", "md5": "5feef6d239b6547bce0065662a0a4247", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613846", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613846/SRR30613846", "size": "20031980887", "date": "2024-09-10 04:11:19", "md5": "52a48f710d0f8b9e1d3d03834a86ea86", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613846.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613846/SRR30613846.lite.1", "size": "14570416791", "date": "2024-09-10 04:45:21", "md5": "bb8d20c01b6620d9f0d8129b1373791b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]