EXPERIMENT_TITLE: MEC-1 rep1 Hi-C
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal of this study is to investigate the changes between ibrutinib-resistant CLL cells and parental cells. Multi-omics were used to explore the changes of MEC-1R cells from DNA, RNA and protein levels. Hi-C, ATAC-seq, RNA-seq and TMT were performed in this project.
SAMPLE_TITLE: MEC-1 rep1 Hi-C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "not applicable"}, {"TAG": "age", "VALUE": "not applicable"}, {"TAG": "biomaterial_provider", "VALUE": "not applicable"}, {"TAG": "sex", "VALUE": "not applicable"}, {"TAG": "tissue", "VALUE": "not applicable"}, {"TAG": "cell_line", "VALUE": "MEC-1"}, {"TAG": "treatment", "VALUE": "no treatment"}, {"TAG": "file1", "VALUE": "MEC1A_R1.fq.gz"}, {"TAG": "file2", "VALUE": "MEC1A_R2.fq.gz"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: MEC-1 rep1 Hi-C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MEC-1 rep1 Hi-C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15049548.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR015/15049/SRR15049548/SRR15049548.lite.1", "size": "67372926462", "date": "2022-09-09 12:47:51", "md5": "17c075fa9ac616fc90bbd166b434bd06", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15049548", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15049548/SRR15049548", "size": "87990752170", "date": "2021-07-07 16:07:26", "md5": "de55d65cbfbea13b825720e5c6f476d9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1A_R2.fq.gz", "size": "63575564724", "date": "2021-07-07 14:05:47", "md5": "f410915ebee88528906ba4e4cb400b5d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1A_R1.fq.gz", "size": "60218101398", "date": "2021-07-07 14:34:32", "md5": "d6884803ad6f9b3d1694d5270e01f424", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]