EXPERIMENT_TITLE: Illumina HiSeq 4000 paired end sequencing
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human SGBS preadipocytes were differentiated into adipocytes, and human iPSCs were differentiated into hypothalamic neurons. Cells were collected for in situ promoter capture Hi-C [PMID: 29988018] at several differentiation stages. The differentiations were performed in one biological replicate, with two technical replicates (different wells of the differentiation that were also processed individually during library preparation).  SGBS Day0: Represents the preadipocyte state.  SGBS Day2: Represents immature adipocytes.  SGBS Day8: Represents early mature adipocytes.  SGBS Day16: Represents mature adipocytes.  Hypothalamic Day 12: Represents early hypothalamic neurons.  Hypothalamic Day 16: Represents mid hypothalamic neurons.  Hypothalamic Day 27: Represents mature hypothalamic neurons.
SAMPLE_TITLE: hypothalamic neuron day12 rep1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENA first public", "VALUE": "2021-05-29"}, {"TAG": "ENA last update", "VALUE": "2021-05-29"}, {"TAG": "External Id", "VALUE": "SAMEA8784841"}, {"TAG": "INSDC center alias", "VALUE": "UNIVERSITY OF CHICAGO"}, {"TAG": "INSDC center name", "VALUE": "UNIVERSITY OF CHICAGO"}, {"TAG": "INSDC first public", "VALUE": "2021-05-29T00:13:48Z"}, {"TAG": "INSDC last update", "VALUE": "2021-05-29T00:13:48Z"}, {"TAG": "INSDC status", "VALUE": "public"}, {"TAG": "Submitter Id", "VALUE": "E-MTAB-10488:hypothalamic neuron day12 rep1"}, {"TAG": "broker name", "VALUE": "ArrayExpress"}, {"TAG": "cell line", "VALUE": "iPSC derived cell line"}, {"TAG": "cell type", "VALUE": "early hypothalamic neuron"}, {"TAG": "common name", "VALUE": "human"}, {"TAG": "day of differentiation", "VALUE": "12"}, {"TAG": "developmental stage", "VALUE": "embryo stage"}, {"TAG": "genotype", "VALUE": "wild type genotype"}, {"TAG": "organism part", "VALUE": "hypothalamus"}, {"TAG": "replicate", "VALUE": "1"}, {"TAG": "sample name", "VALUE": "E-MTAB-10488:hypothalamic neuron day12 rep1"}]
Pool_Member_@attributes_sample_title: hypothalamic neuron day12 rep1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: hypothalamic neuron day12 rep1
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