EXPERIMENT_TITLE: GSM7610339: intact Hi-C from HCT116 (ENCLB127EZO); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS567HKI
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS567HKI"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Dr. Masato Kanemaki"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS567HKI
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS567HKI
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF028MHE.fastq.gz", "size": "87615332488", "date": "2023-08-03 09:48:39", "md5": "874de0f04dba964cb8270877d0c71ac1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419444", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419444/SRR25419444", "size": "70004859537", "date": "2023-08-03 10:13:11", "md5": "b32dab688920b137e176a724ac4333ba", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419444.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419444/SRR25419444.lite.1", "size": "31148052467", "date": "2023-08-08 11:11:11", "md5": "b6828ebfb7aeb13f76def28c129d4534", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]