EXPERIMENT_TITLE: GSM7618736: intact Hi-C from HCT116 (ENCLB430YQC); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS690BSF
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS690BSF"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Dr. Masato Kanemaki"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS690BSF
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS690BSF
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF162FPA.fastq.gz", "size": "86512265188", "date": "2023-08-05 13:07:30", "md5": "19cdfb4a9889cb432c26b002ab5b4904", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419655", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419655/SRR25419655", "size": "69483302957", "date": "2023-08-05 13:23:51", "md5": "b6b8cee15db42be9285da70f5b00af37", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419655.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR025/25419/SRR25419655/SRR25419655.lite.1", "size": "29487803719", "date": "2023-08-10 15:35:11", "md5": "ca182253c6a9f690c7f50fd8c9e3cf6f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]