EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA19391
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA19391"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Kenya: WEBUYE"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "LUHYA"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19391-2_S28_L001_R1_001.fastq.gz", "size": "5781901758", "date": "2024-08-14 21:11:52", "md5": "92fc10bc2c5ff38ccd5aba0c814f065c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19391-2_S28_L001_R2_001.fastq.gz", "size": "6118080931", "date": "2024-08-14 21:13:16", "md5": "f8e3b67399a837b35ef047fe8894a774", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242490", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242490/SRR30242490", "size": "8024879378", "date": "2024-08-14 21:15:53", "md5": "511d870a2b43e02222fc10b419b7c0a6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242490.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242490/SRR30242490.lite.1", "size": "5415285970", "date": "2024-08-14 22:50:50", "md5": "ca62e3fe8de25e54bae1089a8fd926f6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]