EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04187
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04187"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2020-11-04"}, {"TAG": "geo_loc_name", "VALUE": "Bangladesh"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Bengali"}, {"TAG": "family_id", "VALUE": "BD62"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04187-04a-2_S4_L004_R1_001.fastq.gz", "size": "4179984580", "date": "2024-09-10 03:49:09", "md5": "bce896e99c9851f875dc8cd9c6c24dd8", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04187-04a-2_S4_L004_R2_001.fastq.gz", "size": "4267048284", "date": "2024-09-10 03:48:01", "md5": "b23ed425654ddf2b6ab3c0a0952806d2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613589", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613589/SRR30613589", "size": "5627702282", "date": "2024-09-10 03:53:07", "md5": "f26a1bf9664eba7d9754d9e729c038b6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613589.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613589/SRR30613589.lite.1", "size": "3932446526", "date": "2024-09-10 04:39:08", "md5": "ae603e17aad8b8f9c2b974622548c48c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]