EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02647
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02647
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02647"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Gambian in Western Division, The Gambia - Mandinka"}, {"TAG": "family id", "VALUE": "GB38"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02647
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02647
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02647-36b-2_S20_L002_R1_001.fastq.gz", "size": "14718899464", "date": "2024-09-10 04:17:32", "md5": "2b905b06d73dedbf8d0312f95f92e0ef", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02647-36b-2_S20_L002_R2_001.fastq.gz", "size": "13601937906", "date": "2024-09-10 04:17:00", "md5": "31562e8380b4a7afd698bc4eb70f4ce4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613891", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613891/SRR30613891", "size": "19231901211", "date": "2024-09-10 04:20:27", "md5": "9388fd686a41108966c40958081c1eaa", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613891.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613891/SRR30613891.lite.1", "size": "13021219939", "date": "2024-09-10 04:47:49", "md5": "fe61661d27ee4a174a3bc92069d5e69d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]