EXPERIMENT_TITLE: GSM7611112: intact Hi-C from MCF 10A (ENCLB039JNC); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS436GYV
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS436GYV"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "MCF 10A"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "fibrocystic disease"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "36 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000AAP"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS436GYV
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS436GYV
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF230FME.fastq.gz", "size": "141514320581", "date": "2023-08-09 06:05:29", "md5": "90b2b22f11fec8c842e4a1e66b711e0f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419625", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419625/SRR25419625", "size": "149030074803", "date": "2023-08-09 06:56:43", "md5": "15b7ae6b2165be0a8e5f94822ac86c6f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419625.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/SRR025/25419/SRR25419625/SRR25419625.lite.1", "size": "80944553549", "date": "2023-08-14 08:58:36", "md5": "609ef5040694d595bc950a73e93ef528", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]