EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA18570
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA18570"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-05-10"}, {"TAG": "geo_loc_name", "VALUE": "China: BEIJING"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "HAN CHINESE"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18570-2_S14_L001_R1_001.fastq.gz", "size": "5670636816", "date": "2024-08-14 20:59:32", "md5": "7112d12b1b18ff9cdea7ba7a32d4fb4e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18570-2_S14_L001_R2_001.fastq.gz", "size": "5764583188", "date": "2024-08-14 21:00:00", "md5": "3dd34b0913a98453dcd11c398614b373", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242155", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242155/SRR30242155", "size": "7702202033", "date": "2024-08-14 21:01:16", "md5": "fe4a1fa5f3878197d85806d37cbe92d1", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242155.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242155/SRR30242155.lite.1", "size": "5227306237", "date": "2024-08-14 22:42:01", "md5": "adfe81e8d9f11ac9089cc11ad1984fc4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]