EXPERIMENT_TITLE: Hi-C for LMNB1-LMNB2_treated24hrs_withdraw_rep3
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal is to assess how gene expression changes upon auxin-induced loss of lamins B1 and B2. The time points assessed for RNA-seq are 0-hour auxin, 12-hour auxin, 48-hour auxin, and 48-hour auxin with 6 days of auxin withdrawn. For Hi-C, the conditions tested are 0-hour auxin, 24-hour auxin, and 24-hour auxin with 6 days of auxin withdrawn. These were collected for auxin-induced loss of lamin B1, lamin B2, and both lamin B1 and B2. The 48-hour auxin condition was only tested for auxin-induced loss of lamin B1 and B2.
SAMPLE_TITLE: LMNB1-LMNB2_treated24hrs_withdraw_rep3
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "LMNB1+B2 withdraw 3"}, {"TAG": "age", "VALUE": "adult"}, {"TAG": "biomaterial_provider", "VALUE": "Erez Lieberman Aiden (Baylor College of Medicine); Masato Kanemaki (National Institute of Genetics); Vadim Backman (Northwestern University)"}, {"TAG": "collection_date", "VALUE": "2018-04-25"}, {"TAG": "geo_loc_name", "VALUE": "USA"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "Large intestine; Colon"}, {"TAG": "cell_line", "VALUE": "HCT116 Lamin(B1&B2)-AID"}, {"TAG": "cell_type", "VALUE": "epithelial"}, {"TAG": "disease", "VALUE": "Carcinoma; Colorectal"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: LMNB1-LMNB2_treated24hrs_withdraw_rep3
RUN_SET_RUN_Pool_Member_@attributes_sample_title: LMNB1-LMNB2_treated24hrs_withdraw_rep3
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