EXPERIMENT_TITLE: GSM7610443: intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB898BNW); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS949CQQ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS949CQQ"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "activated CD4-positive, alpha-beta T cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "20 year"}, {"TAG": "donor ID", "VALUE": "ENCDO394DKX"}, {"TAG": "lab", "VALUE": "Yijun Ruan, JAX"}, {"TAG": "source", "VALUE": "AllCells"}, {"TAG": "treatments", "VALUE": "treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 36; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS949CQQ
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS949CQQ
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF769KDK.fastq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR25419581/ENCFF769KDK.fastq.gz.1", "size": "40645794481", "date": "2023-08-24 10:29:04", "md5": "7843b402c4c28385a2c4a3eabbf39f20", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419581", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419581/SRR25419581", "size": "31599901200", "date": "2023-08-24 10:34:23", "md5": "21770190d52d75b6530bbb6355f124af", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419581.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/SRR025/25419/SRR25419581/SRR25419581.lite.1", "size": "15943223387", "date": "2023-08-29 12:04:58", "md5": "9c97e1412d9e83ca4791aa4c0c59e9d9", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]