EXPERIMENT_TITLE: GSM7657950: intact Hi-C from ovary (ENCLB828SVQ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS760ECF
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS760ECF"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "ovary"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "DM: yes; HTN: yes; CAD: no"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "59 year"}, {"TAG": "donor ID", "VALUE": "ENCDO856ZOJ"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "source", "VALUE": "Yiing Lin, MD, PhD"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS760ECF
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419970", "SUBMITTER_ID": "GSM7657950_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417560", "EXTERNAL_ID": "SAMN35124195"}, "@attributes": {"member_name": "", "accession": "SRS18417560", "sample_name": "ENCODE biosample ENCBS760ECF", "sample_title": "ENCODE biosample ENCBS760ECF", "spots": "783914540", "bases": "221401703065", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419970.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419970/SRR25419970.lite.1", "size": "67308876654", "date": "2023-08-17 09:02:57", "md5": "6ac7f4e4bb0640365a3dfca9bdfc0461", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF299JTZ.fastq.gz", "size": "139967416248", "date": "2023-08-12 06:31:40", "md5": "205ab61ef574cea555221f0245c12279", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419970", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419970/SRR25419970", "size": "129079629282", "date": "2023-08-12 07:18:17", "md5": "0036609be04b61f5b46a6cea65769843", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7657950_r1", "accession": "SRR25419970", "total_spots": "783914540", "total_bases": "221401703065", "size": "129079627422", "load_done": "true", "published": "2023-08-12 07:21:57", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419971", "SUBMITTER_ID": "GSM7657950_r2"}, "EXPERIMENT_REF": null, "SRAFiles": {"SRAFile": {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF482SVT.fastq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR25419971/ENCFF482SVT.fastq.gz.1", "size": "200010915361", "date": "2023-08-11 12:38:14", "md5": "173df80baf001ff4180f6f65dfbab259", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}}, "CloudFiles": {"CloudFile": null}, "@attributes": {"alias": "GSM7657950_r2", "accession": "SRR25419971", "load_done": "true", "published": "2023-08-11 12:43:21", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}]