EXPERIMENT_TITLE: GSM3612258: Ecoli 2_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: Ecoli 2_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: Ecoli 2_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Ecoli 2_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591516.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR008/591/SRR8591516.sralite.1", "size": "3637708286", "date": "2020-06-19 22:20:24", "md5": "7099e2ef5b71e0b0cbdacc23f0e111f0", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591516", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591516/SRR8591516", "size": "5659322434", "date": "2019-02-19 14:27:18", "md5": "9d025cb272a08613a4a4dedeaf53f0b0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MD0815_index8_md3_S3_L001_R2.fastq.bz2", "size": "3191599073", "date": "2020-03-10 12:16:56", "md5": "1bbb89d16331363eed2e4851b1d12e5f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MD0815_index8_md3_S3_L001_R1.fastq.bz2", "size": "2853600838", "date": "2020-03-10 10:19:21", "md5": "6e72cd48458740d95ea6e427b1b50e07", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]