EXPERIMENT_TITLE: GSM3612252: US 1.2_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: US 1.2_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: US 1.2_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: US 1.2_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_US_2_R2.fastq.gz", "size": "1583823648", "date": "2020-03-10 15:38:36", "md5": "4922a90b68651a6b1ed04ddbf5046b58", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591510", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591510/SRR8591510", "size": "2125134474", "date": "2019-02-19 13:23:38", "md5": "b9e9620e2719abd929010f1bc9cf0bc6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591510.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR008/591/SRR8591510.sralite.1", "size": "1189436014", "date": "2020-06-20 05:04:07", "md5": "c4d9da4609322db6fa3f10847d455850", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_US_2_R1.fastq.gz", "size": "1310616224", "date": "2020-03-10 16:03:40", "md5": "b24b526dffb3863877e3f21d88358b5a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]