EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00642
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG00642
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00642"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Puerto Rican in Puerto Rico"}, {"TAG": "family id", "VALUE": "PR04"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG00642
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG00642
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00642-33b-2_S10_L001_R1_001.fastq.gz", "size": "10826142052", "date": "2024-09-10 04:17:22", "md5": "27638e9f7d89c6b6c575d68f8ed598d0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00642-33b-2_S10_L001_R2_001.fastq.gz", "size": "9909444064", "date": "2024-09-10 04:12:59", "md5": "f0c33ddccfe71cb4317f5bae8ad79d86", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613753", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613753/SRR30613753", "size": "14132358319", "date": "2024-09-10 04:32:59", "md5": "a1dbfed71267d50173e496931ab61395", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613753.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613753/SRR30613753.lite.1", "size": "9605934871", "date": "2024-09-10 04:40:57", "md5": "e27cceff38fe63d21ff9567c12fa8b25", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]