EXPERIMENT_TITLE: Illumina HiSeq 4000 paired end sequencing; 4C-seq at iHUB regions in L3.6pl
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: 8 million cells were treated for 4 hours with vehicle or VIP152 (CDK9i). Then cells were trypsinized and crosslinked using 2% Formaldehyde for 10 minutes. Phenol/Chloroform DNA extraction Libraries were performed as described in Krijger et al
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Evaluation of interaction frequency in parental L3.6pl cells, paclitaxel-resistant cells and resistant cells treated with a CDK9 inhibitor
SAMPLE_TITLE: LIF iHUB Par veh 1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENA-FIRST-PUBLIC", "VALUE": "2023-01-01"}, {"TAG": "ENA-LAST-UPDATE", "VALUE": "2023-01-01"}, {"TAG": "External Id", "VALUE": "SAMEA14382057"}, {"TAG": "INSDC center alias", "VALUE": "Mayo Clinic"}, {"TAG": "INSDC center name", "VALUE": "Mayo Clinic"}, {"TAG": "INSDC first public", "VALUE": "2023-01-01T00:28:00Z"}, {"TAG": "INSDC last update", "VALUE": "2023-01-01T00:28:00Z"}, {"TAG": "INSDC status", "VALUE": "public"}, {"TAG": "Submitter Id", "VALUE": "E-MTAB-11731:LIF iHUB Par veh 1"}, {"TAG": "broker name", "VALUE": "ArrayExpress"}, {"TAG": "cell_line", "VALUE": "L3.6pl"}, {"TAG": "common name", "VALUE": "human"}, {"TAG": "developmental stage", "VALUE": "adult"}, {"TAG": "disease", "VALUE": "pancreatic adenosquamous carcinoma"}, {"TAG": "genotype", "VALUE": "wild type genotype"}, {"TAG": "isolate", "VALUE": "not applicable"}, {"TAG": "organism part", "VALUE": "pancreatic duct"}, {"TAG": "phenotype", "VALUE": "paclitaxel sensitive"}, {"TAG": "sample name", "VALUE": "E-MTAB-11731:LIF iHUB Par veh 1"}, {"TAG": "sampling site", "VALUE": "cceliac lymph node"}]
Pool_Member_@attributes_sample_title: LIF iHUB Par veh 1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: LIF iHUB Par veh 1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "L36_veh_1_LIF_iHUB.FCHLLKMBBXY_L4_R1_IATCACG.fastq.gz", "size": "265169906", "date": "2023-01-10 04:01:13", "md5": "12fb8b9e071c4219a20355975e368fda", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "L36_veh_1_LIF_iHUB.FCHLLKMBBXY_L4_R2_IATCACG.fastq.gz", "size": "312369839", "date": "2023-01-10 04:01:17", "md5": "eb390c49126ca4b2e68587cc409a4fd1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ERR9723971", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/ERR9723971/ERR9723971", "size": "482007481", "date": "2023-01-10 04:01:33", "md5": "cfdb46621b4bd5de7138e9941e34da0a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "ERR9723971.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/ERR009/9723/ERR9723971/ERR9723971.lite.1", "size": "251912165", "date": "2023-01-10 04:28:42", "md5": "355c75c9ba7e8b0518a025e6865f4f3c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]