EXPERIMENT_TITLE: GSM2830550: PVT1 primer R1 biological rep2 technical rep 1 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: PVT1 primer R1 biological rep2 technical rep 1 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "CTACTCACAGCGCATCCCTA"}, {"TAG": "primer_ds", "VALUE": "GGGGACAAAATTGGAACTTACTGG"}]
Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep2 technical rep 1 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PVT1 primer R1 biological rep2 technical rep 1 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216937", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216937/SRR6216937", "size": "6601579", "date": "2017-10-25 17:45:02", "md5": "f88732a88f294ca7df0b94b0ece92463", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216937.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216937.sralite.1", "size": "3701423", "date": "2020-06-14 00:18:29", "md5": "5816813c12ecfbe0920ec47284f89bec", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R2-rep1_S135_conc_R2_001.fastq.gz", "size": "5840866", "date": "2020-03-17 03:10:52", "md5": "fd11c73cd6aa5a65f77f78d434635027", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PVT-R1-MCF-R2-rep1_S135_conc_R1_001.fastq.gz", "size": "3938707", "date": "2020-03-17 03:11:08", "md5": "958ab7b802215be553d74d020bdf2333", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]