EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03874
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03874"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-10-25"}, {"TAG": "geo_loc_name", "VALUE": "United Kingdom"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03874-1_FC1_S3_L001_R1_001.fastq.gz", "size": "6252255749", "date": "2024-08-21 23:38:50", "md5": "d6a2ac216c87b1fe8c4d66f6652fbe91", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03874-1_FC1_S3_L001_R2_001.fastq.gz", "size": "6436443704", "date": "2024-08-21 23:39:07", "md5": "7cb94547a378723e8be0860180abe768", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310974", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310974/SRR30310974", "size": "8505624969", "date": "2024-08-21 23:40:18", "md5": "339a2aefa20eed3d04f9776d51441662", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310974.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310974/SRR30310974.lite.1", "size": "5547777573", "date": "2024-08-22 03:02:59", "md5": "cc3b0057685fe73a2661714427cf30ee", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]