EXPERIMENT_TITLE: GSM4038123: HiC_OCUM1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using NlaIII, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We analysed chromatin structure alterations by EBV infection to elucidate their contribution to tumorigenesis. We performed Hi-C using gastric epithelial cells with or without EBV infection. Overall design: Hi-C experiments in 14 Gastric cancer cell lines, 2 normal gastric epithelial cells, a primary EBV(+) gastric cancer tissue, and EBV infected or uninfected gastric cancer cells.
SAMPLE_TITLE: HiC_OCUM1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Gastric cancer cell line"}, {"TAG": "cell line", "VALUE": "Gastric cancer cell line OCUM1"}]
Pool_Member_@attributes_sample_title: HiC_OCUM1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: HiC_OCUM1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR9993970", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR9993970/SRR9993970", "size": "43578863911", "date": "2019-08-19 12:18:31", "md5": "6a8439e7f4ba71856e26891cdb0adf36", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR9993970.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR009/993/SRR9993970/SRR9993970.lite.1", "size": "26972697823", "date": "2022-06-10 20:11:43", "md5": "696eb49ac05a205a3f360d37954246a2", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HiC_OCUM1_1_S5_L005_R2_001.fastq", "size": "127753815024", "date": "2019-08-19 11:21:10", "md5": "e96fc78ef8acc1e8a4a44fe3a68b64d6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HiC_OCUM1_1_S5_L005_R1_001.fastq", "size": "127753815024", "date": "2019-08-19 10:23:35", "md5": "203b33212eb008e7c1c4b204f68b2a02", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]