EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03209
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03209"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Mende in Sierra Leone"}, {"TAG": "family id", "VALUE": "SL17"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03209-1_S7_L003_R1_001.fastq.gz", "size": "8261667322", "date": "2024-08-14 21:17:55", "md5": "1828206366ccc3f0906e7667cf971e96", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03209-1_S7_L003_R2_001.fastq.gz", "size": "8712347598", "date": "2024-08-14 21:19:26", "md5": "5526a72c4dc3c6c110aaf8aaf0eb4070", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242221", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242221/SRR30242221", "size": "11457815838", "date": "2024-08-14 21:23:28", "md5": "348f0ba29e794f43477882ed2185ad92", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242221.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242221/SRR30242221.lite.1", "size": "7651232550", "date": "2024-08-14 22:48:12", "md5": "8338afe3cec78f33fa3ee3db2865a0ff", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]