EXPERIMENT_TITLE: Hi-C data of Human replicate 2 sequenced by NovaSeq-6000
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This study takes human adipose tissue as the object. The RNAseq data was used to investigate gene expression. We also identified PEIs (promoter and enhancer interactions) using the Hi-C data. We investigated the correlation between the expression level and PEIs numbers, and also revealed the evolutionary divergence of gene expression attributed by PEIs across species.
SAMPLE_TITLE: Hi-C data of Human replicate 2  sequenced by NovaSeq-6000
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "2"}, {"TAG": "age", "VALUE": "47-year-old"}, {"TAG": "biomaterial_provider", "VALUE": "Sichuan Provincial People's Hospital"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "Abdominal subcutaneous adipose"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Hi-C data of Human replicate 2  sequenced by NovaSeq-6000
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-C data of Human replicate 2  sequenced by NovaSeq-6000
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR13057576.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR013/13057/SRR13057576/SRR13057576.lite.1", "size": "44109908862", "date": "2022-07-21 01:15:02", "md5": "b5bd18ef868586eb4f7f19a84751e24b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR13057576", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13057576/SRR13057576", "size": "53912345074", "date": "2020-11-13 23:19:42", "md5": "bdb38a66a6e1b198239400041788cdf9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "H5-A1_clean_R2.fastq.gz", "size": "39668261569", "date": "2020-11-13 22:44:01", "md5": "4cc4349c37d902158ca27d94115bb9be", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "H5-A1_clean_R1.fastq.gz", "size": "37267533519", "date": "2020-11-13 22:56:54", "md5": "ff6ce571284d9ce895ce3b68722084e0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]