EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02735
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02735"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Punjabi in Lahore,Pakistan"}, {"TAG": "family id", "VALUE": "PK26"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02735-1_S1_L004_R1_001.fastq.gz", "size": "6227587927", "date": "2024-06-26 07:29:43", "md5": "354e44406a3559aa60d794d92cd045bf", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02735-1_S1_L004_R2_001.fastq.gz", "size": "6635129586", "date": "2024-06-26 07:30:02", "md5": "47388cb2b90f0f09dde039241fc68f4c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552834", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552834/SRR29552834", "size": "8597036099", "date": "2024-06-26 07:32:35", "md5": "a871243aee0d21ee0bb33d5d03c404c0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552834.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552834/SRR29552834.lite.1", "size": "5367903123", "date": "2024-06-26 08:17:07", "md5": "8403a0ce737f55eff6c3fc8e653990ee", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]