EXPERIMENT_TITLE: CHP-212 Shallow Hi-C Technical Replicate 2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Illumina WGS, Nanopore WGS, Hi-C, MYCN-anchored 4C-seq, ATAC-seq and ChIP-seq data for MYCN-amplified neuroblastoma cell lines (Kelly, NGP, IMR-5/75 and CHP-212).
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA"}, {"TAG": "age", "VALUE": "1Y8M"}, {"TAG": "biomaterial_provider", "VALUE": "American Type Culture Collection (ATCC)"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "neuroblastoma"}, {"TAG": "disease", "VALUE": "neuroblastoma"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR11467546.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR011/11467/SRR11467546/SRR11467546.lite.1", "size": "250842693", "date": "2022-07-15 15:22:32", "md5": "fa53bcf09e3921b2e45e26ddd6a29d9e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR11467546", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR11467546/SRR11467546", "size": "419083873", "date": "2020-04-02 09:22:56", "md5": "0e90f68e7288f71c792eb32725795ba1", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "CHP212_ShallowHiC_TechnRep2_R2.fastq.gz", "size": "365523666", "date": "2020-04-02 09:21:15", "md5": "dc564fe817b49250665fe12f646c4f96", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "CHP212_ShallowHiC_TechnRep2_R1.fastq.gz", "size": "316106328", "date": "2020-04-02 09:19:19", "md5": "70e484f305d87b1cf6f714b96bf582f1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]