EXPERIMENT_TITLE: GSM7657960: intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB096DFZ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS226EME
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS226EME"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "activated CD4-positive, alpha-beta T cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "35 year"}, {"TAG": "donor ID", "VALUE": "ENCDO374BBL"}, {"TAG": "lab", "VALUE": "Charles Lee"}, {"TAG": "source", "VALUE": "AllCells"}, {"TAG": "treatments", "VALUE": "treatment_term_id: UniProtKB:P60568; treatment_term_name: Interleukin-2; treatment_type: protein; duration: 14; duration_units: day; treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 24; duration_units: hour; treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 14; duration_units: day;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS226EME
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419981", "SUBMITTER_ID": "GSM7657960_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417564", "EXTERNAL_ID": "SAMN35124124"}, "@attributes": {"member_name": "", "accession": "SRS18417564", "sample_name": "ENCODE biosample ENCBS226EME", "sample_title": "ENCODE biosample ENCBS226EME", "spots": "771582378", "bases": "202172209155", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF490AOY.fastq.gz", "size": "119181148992", "date": "2023-08-14 13:41:02", "md5": "0e3e67fbb660069f8c06d9f89bd92d19", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419981", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419981/SRR25419981", "size": "142606181812", "date": "2023-08-14 14:13:06", "md5": "7547dc91c588a0f73efe3ec730adb1d7", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419981.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419981/SRR25419981.lite.1", "size": "60920919667", "date": "2023-08-19 16:41:23", "md5": "e0aaf262734e9d4916ee7e34b3345693", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7657960_r1", "accession": "SRR25419981", "total_spots": "771582378", "total_bases": "202172209155", "size": "142606179955", "load_done": "true", "published": "2023-08-14 14:19:47", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419982", "SUBMITTER_ID": "GSM7657960_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417564", "EXTERNAL_ID": "SAMN35124124"}, "@attributes": {"member_name": "", "accession": "SRS18417564", "sample_name": "ENCODE biosample ENCBS226EME", "sample_title": "ENCODE biosample ENCBS226EME", "spots": "807198170", "bases": "232932678349", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF599YDU.fastq.gz", "size": "125858850041", "date": "2023-08-14 17:00:59", "md5": "4e0938699432b1571ac03aef3ac49983", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419982", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419982/SRR25419982", "size": "153387231681", "date": "2023-08-14 17:49:13", "md5": "7689c2525047e8a65481e3504d99118a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419982.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419982/SRR25419982.lite.1", "size": "68755341551", "date": "2023-08-19 19:30:33", "md5": "76369d6d259baba67af6d07e0f763427", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7657960_r2", "accession": "SRR25419982", "total_spots": "807198170", "total_bases": "232932678349", "size": "153387229820", "load_done": "true", "published": "2023-08-14 18:03:38", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]