EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02004
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02004
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02004"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL33"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-1_S19_L004_R1_001.fastq.gz", "size": "10139580106", "date": "2024-09-10 03:59:50", "md5": "8e242474da0b50f5f11a6cd252747fe3", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-1_S19_L004_R2_001.fastq.gz", "size": "10689959147", "date": "2024-09-10 04:00:15", "md5": "9caa9c7c8d39caeab505a09e481bf967", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613910", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613910/SRR30613910", "size": "13865053244", "date": "2024-09-10 04:03:57", "md5": "1a591e3a2b8c8432e16db0088c767aa5", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613910.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613910/SRR30613910.lite.1", "size": "10002818816", "date": "2024-09-10 04:45:29", "md5": "829ece575e0771e2274d70f78d952da2", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]