EXPERIMENT_TITLE: GSM6463426: UPCI-SCC-090_WT; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547). Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We comprehensively analysed chromatin interactions in UPCI-SCC-090, UM-SCC-47, UM-SCC-104, FaDu and NP69SV40T by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C
SAMPLE_TITLE: UPCI-SCC-090_WT
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "HPV(+) head and neck cancer cell line"}, {"TAG": "cell line", "VALUE": "UPCISCC090"}, {"TAG": "cell type", "VALUE": "HPV(+) head and neck cancer cell line"}, {"TAG": "restricion enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: UPCI-SCC-090_WT
RUN_SET_RUN_Pool_Member_@attributes_sample_title: UPCI-SCC-090_WT
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR21069569.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR021/21069/SRR21069569/SRR21069569.lite.1", "size": "46441411039", "date": "2022-10-12 20:26:33", "md5": "7902be2c50e74ec512e3bc46a53265ba", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR21069569", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR21069569/SRR21069569", "size": "61958794315", "date": "2022-08-16 01:21:21", "md5": "d72c6d7bd6eff560c65e1d1f63375207", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "UPCISCC090_R2.fastq.gz", "size": "49536239608", "date": "2022-08-16 00:41:11", "md5": "c5f21e910bf128624bf4eaf44c38b2f1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "UPCISCC090_R1.fastq.gz", "size": "46414874859", "date": "2022-08-16 00:44:01", "md5": "3f2f2f21df87b930221292ba94ee7467", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]