EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00639
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00639"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Puerto Rican in Puerto Rico"}, {"TAG": "family id", "VALUE": "PR03"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00639-1_S6_L002_R1_001.fastq.gz", "size": "48457685582", "date": "2024-08-22 02:23:53", "md5": "a21a4b098008424e44ce53fd3461eaa6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00639-1_S6_L002_R2_001.fastq.gz", "size": "50340659851", "date": "2024-08-22 02:25:47", "md5": "c50986277d85e3e80f6a94d6714aa9b0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310943", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310943/SRR30310943", "size": "66375855078", "date": "2024-08-22 02:36:47", "md5": "443dc3588217ce8d990435ab7f06391e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310943.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310943/SRR30310943.lite.1", "size": "44956853334", "date": "2024-08-22 03:20:24", "md5": "554ce3995b4c958f5f1b18243b924bf3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]