EXPERIMENT_TITLE: GSM7622044: intact Hi-C from Caco-2 (ENCLB554LEW); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS022WBK
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS022WBK"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "Caco-2"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal adenocarcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "72 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ACR"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS022WBK
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS022WBK
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419708.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419708/SRR25419708.lite.1", "size": "17055381405", "date": "2023-08-17 08:22:32", "md5": "1edb96aef51e012a195ea0a3adc9a5d9", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419708", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419708/SRR25419708", "size": "35062335197", "date": "2023-08-12 07:23:47", "md5": "855abc5314b301599f9d39edac5d06bf", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF363HLN.fastq.gz", "size": "44814742349", "date": "2023-08-12 07:08:12", "md5": "81a473bdc5d63903434ec3ede1fcc171", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]