EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA20799
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA20799"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-06-21"}, {"TAG": "geo_loc_name", "VALUE": "Italy: TUSCANY"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Italia"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242431.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242431/SRR30242431.lite.1", "size": "8890676320", "date": "2024-08-14 22:49:14", "md5": "90db1f722ee136a13961339305be6e76", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242431", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242431/SRR30242431", "size": "13189528356", "date": "2024-08-14 21:20:17", "md5": "7580836650ebb4eccbd2af864eb8089a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA20799-2_S12_L001_R2_001.fastq.gz", "size": "9860326793", "date": "2024-08-14 21:18:44", "md5": "adcc94494d6fa633489f7f7a32776a4b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA20799-2_S12_L001_R1_001.fastq.gz", "size": "9692851593", "date": "2024-08-14 21:18:11", "md5": "4e1f420296eccbc432c20f2eeeae513a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]