EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02583
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02583"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-01-24"}, {"TAG": "geo_loc_name", "VALUE": "Gambia"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02583-2_FC1_S16_L003_R1_001.fastq.gz", "size": "11964758477", "date": "2024-06-26 07:28:45", "md5": "662a3f45573552a9800a259f3a77ccc4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02583-2_FC2_S16_L003_R2_001.fastq.gz", "size": "12478148155", "date": "2024-06-26 07:29:01", "md5": "0a6def27f459ddf2ab8122a7f1c32920", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552836", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552836/SRR29552836", "size": "16190136532", "date": "2024-06-26 07:29:49", "md5": "b8338e3c5f906ea5634444b9ea83c3e4", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552836.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552836/SRR29552836.lite.1", "size": "11360664420", "date": "2024-06-26 08:21:32", "md5": "73c73301a249a7554f5ea6976dbda7f4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]