EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04115
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04115
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04115"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST111"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04115
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04115
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04115-13a-1_S13_L004_R1_001.fastq.gz", "size": "10889183554", "date": "2024-09-10 04:13:52", "md5": "0d937d1ba603114bfbe4824e381ba31f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04115-13a-1_S13_L004_R2_001.fastq.gz", "size": "10806338575", "date": "2024-09-10 04:14:17", "md5": "95266272f0567c86b630283cdaea92ec", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613742", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613742/SRR30613742", "size": "14627853813", "date": "2024-09-10 04:15:37", "md5": "37f7ac464b3a8f085a996cc4c2a9de85", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613742.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613742/SRR30613742.lite.1", "size": "10309142873", "date": "2024-09-10 04:40:50", "md5": "fde6e90d162bcea6675f3b9fe29cc188", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]