EXPERIMENT_TITLE: GSM3612251: US 1.1_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: US 1.1_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: US 1.1_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: US 1.1_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_US_1_R1.fastq.gz", "size": "1480871813", "date": "2020-03-10 16:03:37", "md5": "28f05d5e8000c4772948b5fca706150a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591509", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591509/SRR8591509", "size": "2344630755", "date": "2019-02-19 13:24:10", "md5": "e2f521fffec124e7e9e62a97fac3f57f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591509.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR008/591/SRR8591509.sralite.1", "size": "1339237111", "date": "2020-06-19 21:58:15", "md5": "3273eb24bb251b23708d5e13e3c72a22", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_US_1_R2.fastq.gz", "size": "1779102828", "date": "2020-03-10 10:05:14", "md5": "68214b91c2c35e18888b3ac3bcbeddd0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]