EXPERIMENT_TITLE: GSM7597683: intact Hi-C from uterus (ENCLB208RKD); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS957VHZ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS957VHZ"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "uterus"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "53 year"}, {"TAG": "donor ID", "VALUE": "ENCDO793LXB"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Kristin Ardlie"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS957VHZ
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419407", "SUBMITTER_ID": "GSM7597683_r1"}, "EXPERIMENT_REF": null, "SRAFiles": {"SRAFile": {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF659HSR.fastq.gz", "url": "https://sra-pub-src-2.s3.amazonaws.com/SRR25419407/ENCFF659HSR.fastq.gz.1", "size": "164536719007", "date": "2023-08-02 09:31:20", "md5": "af684d3b49bb7e7ceef77098b21481e9", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}}, "CloudFiles": {"CloudFile": null}, "@attributes": {"alias": "GSM7597683_r1", "accession": "SRR25419407", "load_done": "true", "published": "2023-08-02 10:21:46", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419408", "SUBMITTER_ID": "GSM7597683_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417298", "EXTERNAL_ID": "SAMN35124211"}, "@attributes": {"member_name": "", "accession": "SRS18417298", "sample_name": "ENCODE biosample ENCBS957VHZ", "sample_title": "ENCODE biosample ENCBS957VHZ", "spots": "449434690", "bases": "127565725949", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419408.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR025/25419/SRR25419408/SRR25419408.lite.1", "size": "37509957600", "date": "2023-08-08 15:07:56", "md5": "9bec5aeeac0a580410611fe2bd01fb1c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419408", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419408/SRR25419408", "size": "85404080058", "date": "2023-08-03 13:44:14", "md5": "a9b56614cb57a47a30e16b68417c6293", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF685ROV.fastq.gz", "size": "70970196111", "date": "2023-08-03 13:27:49", "md5": "c5a693edfcda94f74dc5ca5342add90b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "449434690"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "127565725949"}}, "@attributes": {"alias": "GSM7597683_r2", "accession": "SRR25419408", "total_spots": "449434690", "total_bases": "127565725949", "size": "85404078201", "load_done": "true", "published": "2023-08-03 14:09:39", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419409", "SUBMITTER_ID": "GSM7597683_r3"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417298", "EXTERNAL_ID": "SAMN35124211"}, "@attributes": {"member_name": "", "accession": "SRS18417298", "sample_name": "ENCODE biosample ENCBS957VHZ", "sample_title": "ENCODE biosample ENCBS957VHZ", "spots": "44550853", "bases": "11985207253", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419409.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-7/SRR025/25419/SRR25419409/SRR25419409.lite.1", "size": "3568891220", "date": "2023-08-07 08:19:00", "md5": "f7df40d6534e04512ccd28f2090f2f7e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419409", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419409/SRR25419409", "size": "8050043082", "date": "2023-08-02 07:57:46", "md5": "ad6cabfa1c7f5bcb729b67b175d9088c", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF814HNJ.fastq.gz", "url": "https://sra-pub-src-2.s3.amazonaws.com/SRR25419409/ENCFF814HNJ.fastq.gz.1", "size": "8556228606", "date": "2023-08-02 07:53:29", "md5": "1b02320a2269375d5d5538066c05f440", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "44550853"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "11985207253"}}, "@attributes": {"alias": "GSM7597683_r3", "accession": "SRR25419409", "total_spots": "44550853", "total_bases": "11985207253", "size": "8050041224", "load_done": "true", "published": "2023-08-02 08:12:50", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]