EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA19700
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA19700"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-09-27"}, {"TAG": "geo_loc_name", "VALUE": "USA"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552754.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552754/SRR29552754.lite.1", "size": "8060638503", "date": "2024-06-26 08:19:25", "md5": "b375889a32b22fcadd0b1e18a9351124", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552754", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552754/SRR29552754", "size": "12548580659", "date": "2024-06-26 07:38:09", "md5": "f082dffc56e4d04e1b8f662b6562bc94", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19700-1_FC2_S1_L001_R1_001.fastq.gz", "size": "9191301936", "date": "2024-06-26 07:35:48", "md5": "6f9f53b2e132536d75f4e4da47df0a7c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA19700-1_FC1_S1_L001_R2_001.fastq.gz", "size": "9457306961", "date": "2024-06-26 07:35:31", "md5": "cef0f4ac150d13d4cc3f09ffec1f6fc1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]