EXPERIMENT_TITLE: HChi10003_NoIndex.experiment
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C libraries were prepared essentially as described previously (Fraser, Ferrai, et al. 2015, doi:10.15252/msb.20156492; Lieberman-Aiden et al. 2009, doi: 10.1126/science.1181369) with minor changes to improve the DNA yield of Hi-C products (Fraser, Williamson, et al. 2015, doi:10.1128/MMBR.00006-15).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project aims to systematically elucidate the function of long non-coding RNAs (lncRNAs) in the human genome.
SAMPLE_TITLE: Human primary dermal fibroblasts derived from neonatal foreskin (Set 1), reference Hi-C sample, biol_rep3
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "sample_name", "VALUE": "F6-001-HIC-000-00003-78E4"}, {"TAG": "biological_replicate", "VALUE": "biol_rep3"}, {"TAG": "biomaterial_provider", "VALUE": "Lonza Catalog #: CC-2509"}, {"TAG": "cell_line", "VALUE": "NHDF-Neo"}, {"TAG": "cell_type", "VALUE": "fibroblasts"}, {"TAG": "cell_type_alias", "VALUE": "HDF (neonatal)"}, {"TAG": "dev_stage", "VALUE": "neonate"}, {"TAG": "experiment_type", "VALUE": "Reference"}, {"TAG": "perturb_technology", "VALUE": "None"}, {"TAG": "run_no", "VALUE": "0"}, {"TAG": "sample_type", "VALUE": "cell culture"}, {"TAG": "sampling_type", "VALUE": "reference"}, {"TAG": "set_no", "VALUE": "1"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "skin"}]
Pool_Member_@attributes_sample_title: Human primary dermal fibroblasts derived from neonatal foreskin (Set 1), reference Hi-C sample, biol_rep3
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human primary dermal fibroblasts derived from neonatal foreskin (Set 1), reference Hi-C sample, biol_rep3
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "DRR179525", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR179525/DRR179525", "size": "21482365481", "date": "2019-07-18 20:45:06", "md5": "1f00cb2feb3b0a610b753821b545eceb", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "DRR179525.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/DRR000/179/DRR179525/DRR179525.lite.1", "size": "9147782987", "date": "2022-07-09 18:56:23", "md5": "8b9d957658aad57409c365d6c493836a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]