EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03470
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03470"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Sierra Leone"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "SIERRA LEONE"}, {"TAG": "family_id", "VALUE": "SL56"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-1_S18_L004_R1_001.fastq.gz", "size": "6526645087", "date": "2024-08-14 21:09:34", "md5": "6dafc495bb564e95820e586c3b4f09e3", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-1_S18_L004_R2_001.fastq.gz", "size": "6667819273", "date": "2024-08-14 21:09:50", "md5": "97bfffe7fe505576188ca36dffef8470", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242318", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242318/SRR30242318", "size": "8884552538", "date": "2024-08-14 21:11:56", "md5": "6c80ec63df9ab6ccb9b701dc76267e23", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242318.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242318/SRR30242318.lite.1", "size": "6149842014", "date": "2024-08-14 22:48:43", "md5": "e4fce37a981dacda20848c470282b3af", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]