EXPERIMENT_TITLE: GSM7656133: intact Hi-C from HCT116 (ENCLB243IIE); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS131GYJ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS131GYJ"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Dr. Masato Kanemaki"}, {"TAG": "treatments", "VALUE": "treatment_term_name: 5-Phenyl-1H-indole-3-acetic acid; treatment_type: chemical; duration: 6; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS131GYJ
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419809", "SUBMITTER_ID": "GSM7656133_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417485", "EXTERNAL_ID": "SAMN35124089"}, "@attributes": {"member_name": "", "accession": "SRS18417485", "sample_name": "ENCODE biosample ENCBS131GYJ", "sample_title": "ENCODE biosample ENCBS131GYJ", "spots": "666661603", "bases": "159094165464", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419809.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419809/SRR25419809.lite.1", "size": "49226298842", "date": "2023-08-16 11:56:30", "md5": "aadf65d425b709dbe4176dcbef288500", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419809", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419809/SRR25419809", "size": "85966526018", "date": "2023-08-11 09:54:30", "md5": "15ebc796f6469a5ea24bba1416111f3d", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF317FKJ.fastq.gz", "size": "107236746156", "date": "2023-08-11 09:41:21", "md5": "ee2b27d16a55466bbad1070c32fc70e4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "666661603"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "159094165464"}}, "@attributes": {"alias": "GSM7656133_r1", "accession": "SRR25419809", "total_spots": "666661603", "total_bases": "159094165464", "size": "85966524157", "load_done": "true", "published": "2023-08-11 10:41:56", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419811", "SUBMITTER_ID": "GSM7656133_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417485", "EXTERNAL_ID": "SAMN35124089"}, "@attributes": {"member_name": "", "accession": "SRS18417485", "sample_name": "ENCODE biosample ENCBS131GYJ", "sample_title": "ENCODE biosample ENCBS131GYJ", "spots": "440299506", "bases": "128428621022", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419811.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419811/SRR25419811.lite.1", "size": "38430349267", "date": "2023-08-16 05:41:43", "md5": "ecb886ee88f357280b8ad58aba758fe2", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419811", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419811/SRR25419811", "size": "70883137044", "date": "2023-08-11 04:08:26", "md5": "b32ea2abfed91da9fcc9a357dab2a615", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF516ENO.fastq.gz", "url": "https://sra-pub-src-2.s3.amazonaws.com/SRR25419811/ENCFF516ENO.fastq.gz.1", "size": "72389883032", "date": "2023-08-11 03:38:05", "md5": "9342b45f5c7f12e32d4b98d2a8590958", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "440299506"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "128428621022"}}, "@attributes": {"alias": "GSM7656133_r2", "accession": "SRR25419811", "total_spots": "440299506", "total_bases": "128428621022", "size": "70883135184", "load_done": "true", "published": "2023-08-11 04:29:00", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]