EXPERIMENT_TITLE: GSM7646187: intact Hi-C from MCF-7 (ENCLB556RWF); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS885VEP
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS885VEP"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "MCF-7"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "breast cancer (adenocarcinoma)"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "69 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000AAE"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS885VEP
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS885VEP
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF640QOG.fastq.gz", "size": "209673567976", "date": "2023-08-11 19:20:11", "md5": "04067ae316c69ddd8aed948b67b93940", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419781", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419781/SRR25419781", "size": "163678480755", "date": "2023-08-11 20:16:18", "md5": "01ca6993ef5369e6e880679d61709874", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419781.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419781/SRR25419781.lite.1", "size": "81731988800", "date": "2023-08-16 21:25:33", "md5": "f0461bee9e87a28d5e8a8f9f3ea74cc5", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]