EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03942
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG03942
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03942"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Bengali in Bangladesh"}, {"TAG": "family id", "VALUE": "BD42"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG03942
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG03942
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03942-03b-2_S18_L003_R1_001.fastq.gz", "size": "4473296381", "date": "2024-09-10 03:45:01", "md5": "de9b173b210131fcf2fb3bb95b52a1d0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03942-03b-2_S18_L003_R2_001.fastq.gz", "size": "4505665017", "date": "2024-09-10 03:45:12", "md5": "ddf2624043daa905b0332080cbd5353c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613747", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613747/SRR30613747", "size": "6008273234", "date": "2024-09-10 03:46:31", "md5": "51cec47105f68dd8b5be3f414ba05a88", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613747.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613747/SRR30613747.lite.1", "size": "4185390998", "date": "2024-09-10 04:39:53", "md5": "46c688a1f3d5353b80b128e5e3bea2ad", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]