EXPERIMENT_TITLE: GSM2830537: MYC primer F2 biological rep1 technical rep 2 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: MYC primer F2 biological rep1 technical rep 2 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "AGGCCGCTCTTACCTTTACT"}, {"TAG": "primer_ds", "VALUE": "TGCCAACTTCCTTCCCGAAAG"}]
Pool_Member_@attributes_sample_title: MYC primer F2 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MYC primer F2 biological rep1 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-F2-MCF-R1-rep2_S62_conc_R2_001.fastq.gz", "size": "4059843", "date": "2020-03-17 06:24:06", "md5": "54addd5391e8d586e1e35b57f1fa3f69", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216924", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216924/SRR6216924", "size": "4476732", "date": "2017-10-25 17:43:58", "md5": "cc47ff2accb835fff6eee849dd459472", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216924.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216924.sralite.1", "size": "2956140", "date": "2020-06-14 00:18:29", "md5": "b290a47b5fda7b18980b40a19a7db38a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-F2-MCF-R1-rep2_S62_conc_R1_001.fastq.gz", "size": "3210552", "date": "2020-03-17 03:08:14", "md5": "57ca01be6faead7873bc81ae9517ad72", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]