EXPERIMENT_TITLE: GSM6463427: UM-SCC-104_WT; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547). Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We comprehensively analysed chromatin interactions in UPCI-SCC-090, UM-SCC-47, UM-SCC-104, FaDu and NP69SV40T by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C
SAMPLE_TITLE: UM-SCC-104_WT
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "HPV(+) head and neck cancer cell line"}, {"TAG": "cell line", "VALUE": "UMSCC104"}, {"TAG": "cell type", "VALUE": "HPV(+) head and neck cancer cell line"}, {"TAG": "restricion enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: UM-SCC-104_WT
RUN_SET_RUN_Pool_Member_@attributes_sample_title: UM-SCC-104_WT
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR21069568.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR021/21069/SRR21069568/SRR21069568.lite.1", "size": "41059619744", "date": "2022-10-12 20:55:55", "md5": "cd72bd7685091abc0844b237f410e4c2", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR21069568", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR21069568/SRR21069568", "size": "54002334624", "date": "2022-08-16 02:37:13", "md5": "b4a7bd6e8d9cfb01c1e791c3f61b4490", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "UMSCC104_R2.fastq.gz", "size": "43023066367", "date": "2022-08-16 02:00:20", "md5": "28680bc5dc687a2802be84a1d46ba150", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "UMSCC104_R1.fastq.gz", "size": "40982426794", "date": "2022-08-16 01:57:11", "md5": "99c97902ff2418d75a6bdbb9e9f76a1d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]