EXPERIMENT_TITLE: GSM7610378: intact Hi-C from left colon (ENCLB628RVQ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS592JPI
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS592JPI"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "left colon"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "DM: yes; HTN: yes; CAD: no"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "59 year"}, {"TAG": "donor ID", "VALUE": "ENCDO856ZOJ"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "source", "VALUE": "Yiing Lin, MD, PhD"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS592JPI
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS592JPI
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF375PGH.fastq.gz", "size": "175376285407", "date": "2023-08-07 15:43:06", "md5": "d24ab9517a63b1ecb86bd739edfb7f25", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419541", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419541/SRR25419541", "size": "141534155849", "date": "2023-08-07 16:34:20", "md5": "5b5746e7bd927f0bb83fe2be971ec15e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419541.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419541/SRR25419541.lite.1", "size": "82654025685", "date": "2023-08-12 18:16:30", "md5": "41dd97303c5426c95a7ea704bcc014d1", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]