EXPERIMENT_TITLE: PANC-1 Hi-C
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We sequenced the Hi-C libraries generated from PANC-1, Panc10.05, PATU-8988T and PATU-8988S cell lines to study the genomic interactions and enhancer hijacking events in these cells.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "patient"}, {"TAG": "age", "VALUE": "56"}, {"TAG": "biomaterial_provider", "VALUE": "ATCC"}, {"TAG": "collection_date", "VALUE": "2023-04"}, {"TAG": "geo_loc_name", "VALUE": "USA"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "pancreas; Duct"}, {"TAG": "cell_line", "VALUE": "PANC-1"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR26685717.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-24/SRR026/26685/SRR26685717/SRR26685717.lite.1", "size": "53733788604", "date": "2023-11-12 04:35:56", "md5": "573dff6c4501b565f9bc1a781338fa2d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR26685717", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR26685717/SRR26685717", "size": "62003375468", "date": "2023-11-06 23:05:54", "md5": "957fdf1a08341a152c1c40c8233831e9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PANC1_CKDL230019752-1A_225MCVLT3_L2_2.fq.gz", "size": "48711652566", "date": "2023-11-06 22:52:05", "md5": "e2323d4472a1cd3d633e1596e589fe5e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "PANC1_CKDL230019752-1A_225MCVLT3_L2_1.fq.gz", "size": "47917374429", "date": "2023-11-06 22:55:04", "md5": "6938d7ced7c54a192d7631e5d0f7c9ec", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]