EXPERIMENT_TITLE: Raw reads: GM12878_CiFi_DpnII_125K
STUDY_DESCRIPTOR_STUDY_ABSTRACT: By coupling chromatin conformation capture (3C) with PacBio HiFi long-read sequencing, we have developed a new method (CiFi) that enables analysis of genome interactions across repetitive genomic regions with low-input requirements. CiFi produces multiple interacting concatemer segments per read, facilitating genome assembly and scaffolding. Together, the approach enables genomic analysis of previously recalcitrant low-complexity loci and of single individuals of tiny organisms, opening new and exciting avenues of research.
SAMPLE_TITLE: GM12878 human lymphoblastoid cell line
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENA-FIRST-PUBLIC", "VALUE": "2020-03-06T04:05:11Z"}, {"TAG": "ENA-LAST-UPDATE", "VALUE": "2020-02-26T23:35:38Z"}, {"TAG": "External Id", "VALUE": "SAMEA6592574"}, {"TAG": "INSDC center name", "VALUE": "UNIVERSITY OF CALIFORNIA - DAVIS"}, {"TAG": "INSDC first public", "VALUE": "2020-03-06T04:05:11Z"}, {"TAG": "INSDC last update", "VALUE": "2020-02-26T23:35:38Z"}, {"TAG": "INSDC status", "VALUE": "public"}, {"TAG": "Submitter Id", "VALUE": "GM12878"}, {"TAG": "cell type", "VALUE": "Lymphoblastoid cell line"}, {"TAG": "common name", "VALUE": "human"}, {"TAG": "sample name", "VALUE": "GM12878"}, {"TAG": "scientific_name", "VALUE": "Homo sapiens"}]