EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04204
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04204
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04204"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST006"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L003_R1_001.fastq.gz", "size": "15766137128", "date": "2024-09-10 04:22:09", "md5": "01f14a2fa5a5ab65abbd742c0ce833c0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-2_S10_L003_R2_001.fastq.gz", "size": "16611821077", "date": "2024-09-10 04:21:25", "md5": "7539582f06dff851f6351a3a0e9ede70", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613850", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613850/SRR30613850", "size": "21660474320", "date": "2024-09-10 04:28:46", "md5": "bae64fcf7475aec12d327dc9a4635f1c", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613850.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613850/SRR30613850.lite.1", "size": "15864353608", "date": "2024-09-10 04:44:29", "md5": "e22f19680f2e1a4916acc35d2f40f946", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]