EXPERIMENT_TITLE: GSM3612256: PMA 2_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: PMA 2_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: PMA 2_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PMA 2_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591514", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591514/SRR8591514", "size": "28562950209", "date": "2019-02-19 19:05:45", "md5": "d2adf9bac517e3ec2e3d8b94dccc6591", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591514.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR008/591/SRR8591514.sralite.1", "size": "17566878801", "date": "2020-06-20 07:59:28", "md5": "8222d42ff3fc71b330c4845a08532e39", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "160211_stim_S4_L002_R2_001.fastq.bz2", "size": "17287482127", "date": "2020-03-10 12:16:59", "md5": "1c90e43c35beb96827875ad4917fef79", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "160211_stim_S4_L002_R1_001.fastq.bz2", "size": "14075347914", "date": "2020-03-10 10:05:29", "md5": "1f68b2d6c43c69dc7a41c095709cd799", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]