EXPERIMENT_TITLE: GSM3619325: Hi-C from THP-1 (ENCLB135NTF); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4d586808-c50e-428f-81f0-19e2dfc5e6bd/@@download/attachment/Hi-CProtocol_Stanford_Snyder.pdf
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors.  For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.
SAMPLE_TITLE: ENCODE biosample ENCBS443IYN: in situ Hi-C of human cell line: THP-1 cells pma-treated
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "THP-1"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "acute monocytic leukemia"}, {"TAG": "dev_stage", "VALUE": "child"}, {"TAG": "age", "VALUE": "1 year"}, {"TAG": "donor ID", "VALUE": "ENCDO303OIJ"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "treatments", "VALUE": "treatment_term_id: CHEBI:37537; treatment_term_name: phorbol 13-acetate 12-myristate; treatment_type: chemical; duration: 72; duration_units: hour;"}]
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