EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03470
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03470"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Sierra Leone"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "SIERRA LEONE"}, {"TAG": "family_id", "VALUE": "SL56"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-1_S18_L002_R1_001.fastq.gz", "size": "6676975917", "date": "2024-08-14 21:01:18", "md5": "fcd1a7386c5692010a4f41feb4e09cc9", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03470-1_S18_L002_R2_001.fastq.gz", "size": "6849875965", "date": "2024-08-14 21:01:30", "md5": "b373eb93da48c16a78690c60d0658f9d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242222", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242222/SRR30242222", "size": "9111417919", "date": "2024-08-14 21:02:03", "md5": "5ec9c9276353cdd38f9586cb31254995", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242222.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242222/SRR30242222.lite.1", "size": "6292668191", "date": "2024-08-14 22:57:17", "md5": "720a4b6ae8f4ea7017e07dc7f7b211e4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]