EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA18505
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA18505"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-05-02"}, {"TAG": "geo_loc_name", "VALUE": "Nigeria"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18505-1_FC1_S13_L004_R1_001.fastq.gz", "size": "12481890059", "date": "2024-06-26 07:47:34", "md5": "f172aef576b8e3ee15e8b2ff9fe991dd", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18505-1_FC2_S13_L004_R2_001.fastq.gz", "size": "12708000703", "date": "2024-06-26 07:50:38", "md5": "19f56a781188ba4f54c5dd5f1209b712", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552771", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552771/SRR29552771", "size": "16993183071", "date": "2024-06-26 07:58:09", "md5": "43a321b6aff7e2a58133961b01c85169", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552771.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552771/SRR29552771.lite.1", "size": "11277201075", "date": "2024-06-26 08:20:51", "md5": "5359496b1b1c56ed29f9f99392febed5", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]