EXPERIMENT_TITLE: GSM4206394: Choudhary-2018-TW_HIC216; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) in situ HiC, in situ HiC^2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Co-option of transposable elements maintains conserved 3D genome structures via CTCF binding site turnover in human and mouse. Overall design: in situ HiC and in situ Hybrid-capture HiC (HiC^2) were generated for L1M3f-del and LTR41-del GM12878 cell lines
SAMPLE_TITLE: Choudhary-2018-TW_HIC216
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "GM12878 cell line"}, {"TAG": "strain", "VALUE": "LTR41 deletion"}, {"TAG": "gender", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "blood lymphoblastoid"}]
Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC216
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC216
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC216_R1.fastq.gz", "size": "706555419", "date": "2019-12-06 06:40:32", "md5": "6f4a04bb645a9ea13546c4f6f51e9a22", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC216_R2.fastq.gz", "size": "746165513", "date": "2019-12-06 06:40:19", "md5": "5b746ef91bc565c352c0a7f5fffb54ca", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR10597523", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10597523/SRR10597523", "size": "847915939", "date": "2019-12-06 06:40:55", "md5": "a315d8fd65b8cc261ddc3a0a1c4e9b0f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR10597523.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR010/597/SRR10597523.sralite.1", "size": "539180663", "date": "2020-06-19 18:43:54", "md5": "ebe2df3cc657385db5a505ab57aa7c3e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]