EXPERIMENT_TITLE: GSM7042526: NP69T_Hi-C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We analyzed the compartment status and chromatin interactions in nasopharyngeal epithelial cell lines and nasopharyngeal carcinoma cell lines by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C.
SAMPLE_TITLE: NP69T_Hi-C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "nasopharyngeal epithelial cell lines"}, {"TAG": "cell type", "VALUE": "nasopharyngeal epithelial cell lines"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}, {"TAG": "geo_loc_name", "VALUE": "missing"}, {"TAG": "collection_date", "VALUE": "missing"}]
Pool_Member_@attributes_sample_title: NP69T_Hi-C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: NP69T_Hi-C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NP69T_Hi-C_R1.fastq.gz", "size": "602956742", "date": "2023-02-13 23:22:26", "md5": "4dc80667b4d4b7504b14a9c16f5a61cc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NP69T_Hi-C_R2.fastq.gz", "size": "679612534", "date": "2023-02-13 23:22:31", "md5": "2f3530b93a690d6753b49c883ff99ebe", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR23448755", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR23448755/SRR23448755", "size": "886380406", "date": "2023-02-13 23:22:49", "md5": "56f77b0891b920c27a262aadf7f9b9a4", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR23448755.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR023/23448/SRR23448755/SRR23448755.lite.1", "size": "451058938", "date": "2023-02-19 19:16:55", "md5": "f8bbf157282765d67ba9fb483abe523e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]