EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04204
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04204
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04204"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST006"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04204
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-1_S9_L002_R1_001.fastq.gz", "size": "11687989922", "date": "2024-09-10 03:58:28", "md5": "1a884c40be93189613eab9061b8b04cf", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04204-14ab-1_S9_L002_R2_001.fastq.gz", "size": "12324793233", "date": "2024-09-10 03:59:07", "md5": "2c7b92d39987cbb3e6ba26a6acd38633", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613854", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613854/SRR30613854", "size": "16038609549", "date": "2024-09-10 04:04:17", "md5": "be7920ad48349cfd4b8cec662d32a680", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613854.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613854/SRR30613854.lite.1", "size": "11817377077", "date": "2024-09-10 04:45:38", "md5": "956b03f6cc91a9a946d61c21ff3d0377", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]