EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03139
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03139"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Esan in Nigeria"}, {"TAG": "family id", "VALUE": "NG39"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03139-1_S6_L003_R1_001.fastq.gz", "size": "6498417949", "date": "2024-08-14 21:17:59", "md5": "b1deacad3e4b4c9453421a5120d6aa4a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03139-1_S6_L003_R2_001.fastq.gz", "size": "6772338015", "date": "2024-08-14 21:15:19", "md5": "aedeef34c112f5ed5f1fc5703b6f35bb", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242342", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242342/SRR30242342", "size": "8941121325", "date": "2024-08-14 21:22:50", "md5": "5c39ec5961d661f569beee35962d5810", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242342.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242342/SRR30242342.lite.1", "size": "6041169509", "date": "2024-08-14 22:45:53", "md5": "09df3447ed5b729580785298199979d3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]