EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02647
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02647
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02647"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Gambian in Western Division, The Gambia - Mandinka"}, {"TAG": "family id", "VALUE": "GB38"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02647
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02647
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02647-36b-2_S20_L004_R1_001.fastq.gz", "size": "14539493065", "date": "2024-09-10 04:12:37", "md5": "4d94fcfc05416d7946b7f65772306b64", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02647-36b-2_S20_L004_R2_001.fastq.gz", "size": "13356019189", "date": "2024-09-10 04:13:34", "md5": "859626941ae29775461fc52d9548e525", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613889", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613889/SRR30613889", "size": "18978191044", "date": "2024-09-10 04:16:16", "md5": "32fd8843f7dccab362500bf03249bdc0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613889.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613889/SRR30613889.lite.1", "size": "12732976268", "date": "2024-09-10 04:45:41", "md5": "0f1df51dd65e1eef3d75d923f0428d0f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]