EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03225
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03225"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Mende in Sierra Leone"}, {"TAG": "family id", "VALUE": "SL23"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03225-2_S12_L003_R1_001.fastq.gz", "size": "7470025747", "date": "2024-08-14 21:07:28", "md5": "00ee858d095807e833c49f73c2a8fceb", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03225-2_S12_L003_R2_001.fastq.gz", "size": "7741680545", "date": "2024-08-14 21:07:48", "md5": "46fd04162eaf03c990f1397991104c84", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242230", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242230/SRR30242230", "size": "10280211696", "date": "2024-08-14 21:09:49", "md5": "1147bcc044b22ae9f54bc95057590762", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242230.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242230/SRR30242230.lite.1", "size": "6952505180", "date": "2024-08-14 22:50:05", "md5": "73345960142dca51fb3c3faca477e195", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]