EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03225
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03225"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Mende in Sierra Leone"}, {"TAG": "family id", "VALUE": "SL23"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03225-1_S4_L004_R1_001.fastq.gz", "size": "7266905972", "date": "2024-08-14 21:08:15", "md5": "eac5d0ad453e4f668956bcbfe4e97914", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03225-1_S4_L004_R2_001.fastq.gz", "size": "7495425386", "date": "2024-08-14 21:08:42", "md5": "bc5ccd184f92d420f8d7c119bdf7d3e4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242233", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242233/SRR30242233", "size": "9941589786", "date": "2024-08-14 21:10:20", "md5": "586fba5224dc7b4d5d0bd8cef40deefc", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242233.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242233/SRR30242233.lite.1", "size": "6843062618", "date": "2024-08-14 22:42:47", "md5": "6ef318040f7dd6cb3c6ef585d0993136", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]