EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02004
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02004
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02004"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL33"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-2_S20_L004_R1_001.fastq.gz", "size": "10479528493", "date": "2024-09-10 03:54:50", "md5": "e9cf3e0355c99fe2e6bedbbde7e70b30", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-2_S20_L004_R2_001.fastq.gz", "size": "11079422863", "date": "2024-09-10 03:55:26", "md5": "961aeeabc8cacd846456bc3349453848", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613906", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613906/SRR30613906", "size": "14348832969", "date": "2024-09-10 04:01:03", "md5": "78da0902c3a0895c7de183f783027eef", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613906.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613906/SRR30613906.lite.1", "size": "10332574721", "date": "2024-09-10 04:46:39", "md5": "1d9d2cca8927eea8bd5051c1ca1ab2a3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]