EXPERIMENT_TITLE: GSM7610361: intact Hi-C from IMR-90 (ENCLB699AYD); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS785QWQ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS785QWQ"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "IMR-90"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "unknown"}, {"TAG": "dev_stage", "VALUE": "embryonic"}, {"TAG": "age", "VALUE": "16 week"}, {"TAG": "donor ID", "VALUE": "ENCDO000AAX"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS785QWQ
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS785QWQ
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF899SZV.fastq.gz", "size": "136425350117", "date": "2023-08-08 08:43:38", "md5": "b2249daeda4f43885bd4fb60c79f5b36", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419523", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419523/SRR25419523", "size": "109219524683", "date": "2023-08-08 09:16:22", "md5": "748c2bd5eb50ffbba27aa0c808b75f20", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419523.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR025/25419/SRR25419523/SRR25419523.lite.1", "size": "61859417919", "date": "2023-08-13 11:20:19", "md5": "4cb880aefc4a5ff56cb130ece9e150ef", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]