EXPERIMENT_TITLE: GSM7646183: intact Hi-C from HCT116 (ENCLB431WUP); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS755DRE
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS755DRE"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS755DRE
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419776", "SUBMITTER_ID": "GSM7646183_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417447", "EXTERNAL_ID": "SAMN35124110"}, "@attributes": {"member_name": "", "accession": "SRS18417447", "sample_name": "ENCODE biosample ENCBS755DRE", "sample_title": "ENCODE biosample ENCBS755DRE", "spots": "1034086929", "bases": "246157342037", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419776.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/SRR025/25419/SRR25419776/SRR25419776.lite.1", "size": "73717624995", "date": "2023-08-14 14:35:01", "md5": "218cf123771c4b9b70ba1177debc2bd7", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419776", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419776/SRR25419776", "size": "147140108180", "date": "2023-08-09 13:35:02", "md5": "8e38ef97650e0107b3394cc7da6e874a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF889LFJ.fastq.gz", "size": "189300496367", "date": "2023-08-09 12:43:21", "md5": "1eb23a2700d85f7c54549779bde26612", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7646183_r1", "accession": "SRR25419776", "total_spots": "1034086929", "total_bases": "246157342037", "size": "147140106319", "load_done": "true", "published": "2023-08-09 13:36:17", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419777", "SUBMITTER_ID": "GSM7646183_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417447", "EXTERNAL_ID": "SAMN35124110"}, "@attributes": {"member_name": "", "accession": "SRS18417447", "sample_name": "ENCODE biosample ENCBS755DRE", "sample_title": "ENCODE biosample ENCBS755DRE", "spots": "602063908", "bases": "145733504924", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419777.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR025/25419/SRR25419777/SRR25419777.lite.1", "size": "43622800514", "date": "2023-08-13 22:22:44", "md5": "22801c2b78269e3d87057a3b48a3ef0b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419777", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419777/SRR25419777", "size": "88366644911", "date": "2023-08-08 19:10:33", "md5": "105822f8e52407dfded323ac4b5cb17b", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF230IXB.fastq.gz", "url": "https://sra-pub-src-2.s3.amazonaws.com/SRR25419777/ENCFF230IXB.fastq.gz.1", "size": "112529099004", "date": "2023-08-08 18:43:26", "md5": "5fa0d41eea9c623d481699d96dda8671", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "602063908"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "145733504924"}}, "@attributes": {"alias": "GSM7646183_r2", "accession": "SRR25419777", "total_spots": "602063908", "total_bases": "145733504924", "size": "88366643049", "load_done": "true", "published": "2023-08-08 19:39:16", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]