EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03239
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03239"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Punjabi in Lahore,Pakistan"}, {"TAG": "family id", "VALUE": "PK41"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03239-1_S1_L004_R1_001.fastq.gz", "size": "35686935372", "date": "2024-08-22 02:39:06", "md5": "5773af0514de16a639f4e83618e6d775", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03239-1_S1_L004_R2_001.fastq.gz", "size": "37390654605", "date": "2024-08-22 02:48:18", "md5": "95a624f50713c6b70889504f46e69533", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310837", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310837/SRR30310837", "size": "49152059560", "date": "2024-08-22 03:22:00", "md5": "342e970d112341861e152d54a7f7fc56", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310837.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310837/SRR30310837.lite.1", "size": "33080632388", "date": "2024-08-22 05:15:12", "md5": "d4be04e27181d1d6bd3505d2e1879e4f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]