EXPERIMENT_TITLE: GSM7926242: in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: description: The Official 4DN Standard in situ Hi-C protocol adapted from Rao et al. 2014 PMID: 25497547 - with accepted deviations approved by SC 02/21/2017 download: https://data.4dnucleome.org/protocols/fdc20e37-f22e-42dc-8026-0a132739bad1/@@download/attachment/4DN_in_situ_Hi-C_protocol_20170729.pdf
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Replicates of Hi-C on CyT49 cells differentiated to definitive endoderm Overall design: **Data Use Guidelines:** This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper ([doi:10.1038/nature23884](https://doi.org/10.1038/nature23884)) and the 4DN Data Portal paper ([doi:10.1038/s41467-022-29697-4](https://doi.org/10.1038/s41467-022-29697-4)), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the [Data Coordination and Integration Center](mailto:support@4dnucleome.org). lab: Bing Ren, UCSD award: 1U54DK107977-01 accession: 4DNESV11RYSF condition: definitive endoderm submitted_by: Bin Li dataset_label: Hi-C on hESC differentiated to pancreatic endoderm experiment_type: in situ Hi-C url: https://data.4dnucleome.org/experiment-set-replicates/4DNESV11RYSF/ number_of_experiments: 2 experiment: 4DNEXVGPPF1H; replicate_number: Biorep 1, Techrep 1 experiment: 4DNEXLV2KQRB; replicate_number: Biorep 2, Techrep 1 Series supplementary files: *************** workflow_run: https://data.4dnucleome.org/workflow-runs-awsem/50ca456c-5fe8-484b-ba6a-1cd9e07fabfe/ genome_assembly: GRCh38 derived_from: 4DNFI823LSII.chrom.sizes, 4DNFI4LG5248.pairs.gz, 4DNFIKZHGYEO.pairs.gz, 4DNFI823L812.txt description: This is an output file of the Hi-C processing pipeline file_type: contact list-combined file_format: pairs file name: 4DNFI5YPTDEP.pairs.gz *************** workflow_run: https://data.4dnucleome.org/workflow-runs-awsem/50ca456c-5fe8-484b-ba6a-1cd9e07fabfe/ genome_assembly: GRCh38 derived_from: 4DNFI823LSII.chrom.sizes, 4DNFI4LG5248.pairs.gz, 4DNFIKZHGYEO.pairs.gz, 4DNFI823L812.txt description: This is an output file of the Hi-C processing pipeline file_type: contact matrix file_format: mcool file name: 4DNFINXSKZ4F.mcool *************** workflow_run: https://data.4dnucleome.org/workflow-runs-awsem/96710a5c-4c2e-4616-939e-7f5be4dbd3cd/ genome_assembly: GRCh38 derived_from: 4DNFINXSKZ4F.mcool description: Boundaries calls on Hi-C contact matrices file_type: boundaries file_format: bed file name: 4DNFIJ8V3M13.bed.gz *************** workflow_run: https://data.4dnucleome.org/workflow-runs-awsem/96710a5c-4c2e-4616-939e-7f5be4dbd3cd/ genome_assembly: GRCh38 derived_from: 4DNFINXSKZ4F.mcool description: Diamond insulation scores calls on Hi-C contact matrices file_type: insulation score-diamond file_format: bw file name: 4DNFIQ3W2RN4.bw *************** workflow_run: https://data.4dnucleome.org/workflow-runs-awsem/4994a1d5-96f1-4668-a48c-6eb20d609dd4/ genome_assembly: GRCh38 derived_from: 4DNFINXSKZ4F.mcool, 4DNFI7MCA4R6.bedGraph.gz description: Compartments signals on Hi-C contact matrices file_type: compartments file_format: bw file name: 4DNFI1R7X63K.bw
SAMPLE_TITLE: in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "biosource_summary: CyT49 differentiated to definitive endoderm"}, {"TAG": "cell_line", "VALUE": "CyT49"}, {"TAG": "tissue", "VALUE": "definitive endoderm"}, {"TAG": "modifications_summary", "VALUE": "None"}, {"TAG": "Sex", "VALUE": "male"}, {"TAG": "treatments_summary", "VALUE": "None"}, {"TAG": "biosample_type", "VALUE": "in vitro differentiated cells"}, {"TAG": "url", "VALUE": "https://data.4dnucleome.org/biosamples/4DNBS6X3H5E7/"}, {"TAG": "life_stage", "VALUE": "embryonic"}]
Pool_Member_@attributes_sample_title: in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR27006666", "SUBMITTER_ID": "GSM7926242_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "24626939", "bases": "2490128329", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006666.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006666/SRR27006666.lite.1", "size": "682757122", "date": "2023-11-30 20:50:11", "md5": "8d85872f4544504746e11bf77bea36b3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006666", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006666/SRR27006666", "size": "1203703846", "date": "2023-11-30 18:48:58", "md5": "594c09b0951dfc5ea93feb83e205d444", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIQFAKFPH.fastq.gz", "size": "805200917", "date": "2023-11-30 18:48:47", "md5": "30e2ad6d6137e21738ab7ebf5297fa32", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIJWFQX6K.fastq.gz", "size": "948302699", "date": "2023-11-30 18:48:44", "md5": "7a10f3b7beaeb0adc07c7f94069ca53f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "24626939"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "2490128329"}}, "@attributes": {"alias": "GSM7926242_r1", "accession": "SRR27006666", "total_spots": "24626939", "total_bases": "2490128329", "size": "1203700739", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006667", "SUBMITTER_ID": "GSM7926242_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "344015869", "bases": "69127600507", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006667.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006667/SRR27006667.lite.1", "size": "17841745089", "date": "2023-11-30 21:19:00", "md5": "04084f21354680fe84bd9a83cc3363b7", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006667", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006667/SRR27006667", "size": "29497925605", "date": "2023-11-30 19:41:45", "md5": "02636f2cb78a67608632d6d6dc3df91f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFILEB983V.fastq.gz", "size": "21004065654", "date": "2023-11-30 19:33:33", "md5": "eba737e29de68b2f2f23d253665b17b6", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI3MT424R.fastq.gz", "size": "19032040385", "date": "2023-11-30 19:29:20", "md5": "da0438121dba1342af18fa86a223d974", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "344015869"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "69127600507"}}, "@attributes": {"alias": "GSM7926242_r2", "accession": "SRR27006667", "total_spots": "344015869", "total_bases": "69127600507", "size": "29497922791", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006668", "SUBMITTER_ID": "GSM7926242_r3"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "346295599", "bases": "69587729384", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006668.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006668/SRR27006668.lite.1", "size": "17946821372", "date": "2023-11-30 21:40:37", "md5": "73d26c26fc03ebc11ae23f22ed25e2d0", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006668", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006668/SRR27006668", "size": "30759765136", "date": "2023-11-30 19:53:39", "md5": "509f35d90aea3c11bdfed8624d89a8e6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIHHVAY8Y.fastq.gz", "size": "19489253882", "date": "2023-11-30 19:49:29", "md5": "10a3f8329fd4a47831f200f5c8e7a2d9", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIGTSNCT2.fastq.gz", "size": "22207181115", "date": "2023-11-30 19:48:05", "md5": "0cd54965878feaf6b10657d81118e224", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "346295599"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "69587729384"}}, "@attributes": {"alias": "GSM7926242_r3", "accession": "SRR27006668", "total_spots": "346295599", "total_bases": "69587729384", "size": "30759762324", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006669", "SUBMITTER_ID": "GSM7926242_r4"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "341681898", "bases": "68661207166", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006669.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006669/SRR27006669.lite.1", "size": "17713205559", "date": "2023-11-30 21:42:25", "md5": "a140ea6c633bbf13cda3c80f8bc515cc", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006669", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006669/SRR27006669", "size": "30371131155", "date": "2023-11-30 20:00:49", "md5": "a2202a82675aff05071c71b9ee524405", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIY33TTMS.fastq.gz", "size": "22035102188", "date": "2023-11-30 19:50:57", "md5": "a40a4b51e2264d7e5c4ee49d97e5dc01", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIVT6M5BQ.fastq.gz", "size": "19134349179", "date": "2023-11-30 19:49:17", "md5": "14d8624e557d47f0f0a00e885d21d2c2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "341681898"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "68661207166"}}, "@attributes": {"alias": "GSM7926242_r4", "accession": "SRR27006669", "total_spots": "341681898", "total_bases": "68661207166", "size": "30371128342", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006670", "SUBMITTER_ID": "GSM7926242_r5"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "357115476", "bases": "71762404390", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006670.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006670/SRR27006670.lite.1", "size": "18510706645", "date": "2023-11-30 22:17:53", "md5": "3334a43d8a87f148c87b6eca1a8cf611", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006670", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006670/SRR27006670", "size": "31789780053", "date": "2023-11-30 19:40:20", "md5": "436f5549aa6cc8c08c237eaf02cde86b", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI89V6R7D.fastq.gz", "size": "20017452342", "date": "2023-11-30 19:28:26", "md5": "96d53b9c670f456f913e177b4e77efbf", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI1QVHW4A.fastq.gz", "size": "23036736931", "date": "2023-11-30 19:27:35", "md5": "e2f66878b1d125c36e4ea7807210427a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "357115476"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "71762404390"}}, "@attributes": {"alias": "GSM7926242_r5", "accession": "SRR27006670", "total_spots": "357115476", "total_bases": "71762404390", "size": "31789777242", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006671", "SUBMITTER_ID": "GSM7926242_r6"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "350798447", "bases": "70492667629", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI7NS4TSP.fastq.gz", "size": "19580526059", "date": "2023-11-30 19:33:22", "md5": "77e6f39bdc723d8e9d39615d32c34ddd", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006671", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006671/SRR27006671", "size": "30635390335", "date": "2023-11-30 19:59:29", "md5": "c9fd92554c1ca35ef4fb637a6e2b5e87", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIYT52FE1.fastq.gz", "size": "21982987264", "date": "2023-11-30 19:30:15", "md5": "fa931889531c4d0188170ab3b8660a79", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006671.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006671/SRR27006671.lite.1", "size": "18177598291", "date": "2023-11-30 21:38:58", "md5": "143c1818792afc565451ec74f6025347", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "350798447"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "70492667629"}}, "@attributes": {"alias": "GSM7926242_r6", "accession": "SRR27006671", "total_spots": "350798447", "total_bases": "70492667629", "size": "30635387519", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006672", "SUBMITTER_ID": "GSM7926242_r7"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "356391441", "bases": "71617485990", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006672.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006672/SRR27006672.lite.1", "size": "18466097302", "date": "2024-01-10 19:15:40", "md5": "439fb0d46766f5ceba8710c0fa73f2a7", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006672", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006672/SRR27006672", "size": "30773956070", "date": "2024-01-10 18:14:31", "md5": "f914c69c128b4fd1db51720c001543ec", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIMGHFHS4.fastq.gz", "size": "21907065667", "date": "2024-01-10 18:12:05", "md5": "8a465bf9eafb7aeb5cec46168fc6990e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI8Z2ULNC.fastq.gz", "size": "19837954560", "date": "2024-01-10 18:11:02", "md5": "e911877104a6d4799313c5f18f15b93b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "356391441"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "71617485990"}}, "@attributes": {"alias": "GSM7926242_r7", "accession": "SRR27006672", "total_spots": "356391441", "total_bases": "71617485990", "size": "30773953266", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006673", "SUBMITTER_ID": "GSM7926242_r8"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "353586229", "bases": "71054427062", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006673.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006673/SRR27006673.lite.1", "size": "18319056520", "date": "2024-01-10 19:47:11", "md5": "84141dca4e441d8df30ccff46cc7109c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006673", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006673/SRR27006673", "size": "30599193108", "date": "2024-01-10 18:06:12", "md5": "1f986435a19d33458072cdf064453cea", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIR8CPYZS.fastq.gz", "size": "21797841095", "date": "2024-01-10 18:03:16", "md5": "84b416721ebb93fbbdfa2384f6bcb114", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI1GJGW1H.fastq.gz", "size": "19733243094", "date": "2024-01-10 18:01:52", "md5": "74ccdff118b8436f13f5676c0d591d1b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "353586229"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "71054427062"}}, "@attributes": {"alias": "GSM7926242_r8", "accession": "SRR27006673", "total_spots": "353586229", "total_bases": "71054427062", "size": "30599190296", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR27006674", "SUBMITTER_ID": "GSM7926242_r9"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS19692228", "EXTERNAL_ID": ["SAMN38524088", "GSM7926242"]}, "@attributes": {"member_name": "", "accession": "SRS19692228", "sample_name": "GSM7926242", "sample_title": "in situ Hi-C on CyT49 differentiated to definitive endoderm with MboI - 4DNEXVGPPF1H", "spots": "330105676", "bases": "66312492405", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR27006674.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR027/27006/SRR27006674/SRR27006674.lite.1", "size": "17026736741", "date": "2023-11-30 21:17:18", "md5": "acd37372491d7b59ee89956a201cf244", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR27006674", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR27006674/SRR27006674", "size": "28185595037", "date": "2023-11-30 19:44:38", "md5": "8441996a1d0e47475e98a56ef4fcdbd2", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFIL1QTQJW.fastq.gz", "size": "20034655662", "date": "2023-11-30 19:31:12", "md5": "e12f38fef1c128779d1be6edfedcf55a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "4DNFI6SYFXNY.fastq.gz", "size": "18092780803", "date": "2023-11-30 19:27:29", "md5": "7392b8b62b2985bb8443d083a3dfbbcd", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": [null, null], "@attributes": {"nreads": "2", "nspots": "330105676"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "66312492405"}}, "@attributes": {"alias": "GSM7926242_r9", "accession": "SRR27006674", "total_spots": "330105676", "total_bases": "66312492405", "size": "28185592221", "load_done": "true", "published": "2024-12-13 07:56:28", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}]