EXPERIMENT_TITLE: GSM3591810: Activated CD4+ T cells 2 HiC; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: In situ Hi-C was performed as described by Rao et al (Cell 2014; PMID: 25497547).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: CD4+ T cells and CD8+ T cells were isolated from the peripheral blood of two human donors and were cultured to induce activation. High-throughput chromosome confirmation capture (Hi-C) was used to examine DNA interactions between chromosomes. Overall design: Cells were isolated from two human donors, resulting in two biological replicates for cell type.
SAMPLE_TITLE: Activated CD4+ T cells 2 HiC
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood"}, {"TAG": "donor", "VALUE": "2"}, {"TAG": "cell type", "VALUE": "Activated CD4+ T lymphocyte cells"}]
Pool_Member_@attributes_sample_title: Activated CD4+ T cells 2 HiC
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Activated CD4+ T cells 2 HiC
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8534015", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8534015/SRR8534015", "size": "8311293122", "date": "2019-02-05 15:50:17", "md5": "cb5fbd61293d4f1efa39336ccbf2dd59", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8534015.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR008/534/SRR8534015.sralite.1", "size": "5520409550", "date": "2021-06-15 10:58:37", "md5": "638d5704a6b946720316a8de5211e941", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]