EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00280
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00280"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Finnish in Finland"}, {"TAG": "family id", "VALUE": "HG00280"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00280-1_S21_L004_R1_001.fastq.gz", "size": "16235751982", "date": "2024-08-14 21:41:17", "md5": "1b05a9eee54bc152285e03373577a557", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00280-1_S21_L004_R2_001.fastq.gz", "size": "16501313867", "date": "2024-08-14 21:44:09", "md5": "75ef334aef270245998e31823c883d10", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242333", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242333/SRR30242333", "size": "22123048570", "date": "2024-08-14 21:48:33", "md5": "c2f18b8ee2241d7697b5c2522b57c431", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242333.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242333/SRR30242333.lite.1", "size": "15383741718", "date": "2024-08-14 22:51:26", "md5": "af8b58519ebccae20b17f4805852609c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]