EXPERIMENT_TITLE: GSM7656209: intact Hi-C from mammary epithelial cell (ENCLB340JHQ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS131DIO
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS131DIO"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "mammary epithelial cell"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "19 year"}, {"TAG": "donor ID", "VALUE": "ENCDO955XOD"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "Lonza"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS131DIO
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS131DIO
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419913.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419913/SRR25419913.lite.1", "size": "52177262545", "date": "2023-08-16 16:39:41", "md5": "6fa78e9c978030e73db02fd1452a286e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419913", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419913/SRR25419913", "size": "101657758266", "date": "2023-08-11 15:57:09", "md5": "a437560099e6d91740db66f4e6931300", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF364OOJ.fastq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR25419913/ENCFF364OOJ.fastq.gz.1", "size": "131242116650", "date": "2023-08-11 15:30:36", "md5": "d484c12cf28c0ac2d148b446ec189e2d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]