EXPERIMENT_TITLE: GSM8144220: FADU_M_HiC; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Arima HiC-kit A510008 Arima HiC kit protocol followed by Library Preparation using NEBNext Ultra II DNA Library Prep Kit See manuscript in method section See manuscript in method section
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We show that  head and neck squamous cell carcinomas models with deficient H3K36me, induced by H3K36M expression, lead to epigenetic dysregulation. Overall design: RNA-seq, ChIP-seq and Cut/Run in head and neck squamous cell carcinomas, such as FaDU, SCC25, Detroit562 and primary gingival keratinocytes.
SAMPLE_TITLE: FADU_M_HiC
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Head and neck squamous cell carcinomas"}, {"TAG": "cell source", "VALUE": "Homo sapiens"}, {"TAG": "cell line", "VALUE": "Head and neck squamous cell carcinomas"}, {"TAG": "genotype", "VALUE": "Lentiviraly expressed with histone H3.3K36 mutation"}, {"TAG": "genetic modification", "VALUE": "genomic DNA"}, {"TAG": "geo_loc_name", "VALUE": "missing"}, {"TAG": "collection_date", "VALUE": "missing"}]
Pool_Member_@attributes_sample_title: FADU_M_HiC
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