EXPERIMENT_TITLE: GSM3612257: Ecoli 1_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: Ecoli 1_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: Ecoli 1_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Ecoli 1_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591515.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR008/591/SRR8591515.sralite.1", "size": "1046934170", "date": "2020-06-20 05:04:32", "md5": "663b89057efa671df71cb2ce565bb3e7", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591515", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591515/SRR8591515", "size": "1811373306", "date": "2019-02-19 13:22:47", "md5": "25f3311cd0c1d3fdf294ee1c97f74817", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_ecoli_1_R2.fastq.gz", "size": "1367547566", "date": "2020-03-10 16:03:37", "md5": "e2eff8f0e8512d3cbfc1be7000174422", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_ecoli_1_R1.fastq.gz", "size": "1146874124", "date": "2020-03-10 16:03:38", "md5": "23b8ca8d6858f2f1954f4af78d2bc590", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]