EXPERIMENT_TITLE: Hi-C of homo sapiens: glioma cell U251
STUDY_DESCRIPTOR_STUDY_ABSTRACT: RNA-seq, Hi-C, Capture Hi-C between DMSO-treated U251 and TMZ-treated U251
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "U251 cell line"}, {"TAG": "age", "VALUE": "unknown"}, {"TAG": "biomaterial_provider", "VALUE": "Wange Lu"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "brain tumor"}, {"TAG": "cell_line", "VALUE": "U251 cell line"}, {"TAG": "cell_subtype", "VALUE": "adult brain tumor"}, {"TAG": "sample_type", "VALUE": "TMZ_U251 Hi-C part 1"}, {"TAG": "treatment", "VALUE": "TMZ treated"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: TMZ_U251 Hi-C part 1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: TMZ_U251 Hi-C part 1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8446751", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8446751/SRR8446751", "size": "14964102577", "date": "2019-01-16 03:15:39", "md5": "4743e76e254314a792272aede4bf5b7e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8446751.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR008/446/SRR8446751/SRR8446751.sralite.1", "size": "9621894421", "date": "2020-06-22 21:17:10", "md5": "1c8c239a0ad962026d6d38cfda876e0c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FCHJGCHCCXY_L2_CWHPE18020034_R2.fastq.gz", "size": "10584635441", "date": "2020-02-05 23:23:31", "md5": "b4e4eded411729685136207bece951a7", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FCHJGCHCCXY_L2_CWHPE18020034_R1.fastq.gz", "size": "9879249200", "date": "2020-02-06 01:50:53", "md5": "efdf1a22885d4ad82da70b0e7686bebe", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]