EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG01940
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG01940"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2021-06-02"}, {"TAG": "geo_loc_name", "VALUE": "Peru: LIMA"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "PERUVIAN"}, {"TAG": "family_id", "VALUE": "PEL015"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01940-2_S10_L004_R1_001.fastq.gz", "size": "23721327690", "date": "2024-08-22 01:25:38", "md5": "de75365c99e47b0985d74d2b4788b696", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG01940-2_S10_L004_R2_001.fastq.gz", "size": "25356630068", "date": "2024-08-22 01:24:35", "md5": "b417b6e9aa5ecae10faedcc9730e4d0c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310898", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310898/SRR30310898", "size": "33056815675", "date": "2024-08-22 01:36:50", "md5": "6179b2c30542d155783c216db09d07ae", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310898.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310898/SRR30310898.lite.1", "size": "20620406115", "date": "2024-08-22 03:31:30", "md5": "47d53eba7eca288fca78fa3d7b8635e5", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]