EXPERIMENT_TITLE: Hi-C of human: 293T cell
STUDY_DESCRIPTOR_STUDY_ABSTRACT: High-throughput chromatin conformation capture technology (Hi-C) is currently the most widely applied technology in three-dimensional genomics research. However, there are few comprehensive evaluations reported on mainstream Hi-C data quality control software, and there are also significant differences in the specific analysis processes and strategies of different software, leading to limitations in their application.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "293T cell, cell cultuer"}, {"TAG": "age", "VALUE": "4 months"}, {"TAG": "biomaterial_provider", "VALUE": "kongsiyuan"}, {"TAG": "collection_date", "VALUE": "2020-02-01"}, {"TAG": "geo_loc_name", "VALUE": "China"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "Kidney"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "293T_1_i_S_R1.fastq", "size": "2539002136", "date": "2024-12-20 09:15:34", "md5": "f45f784d8a55860c93417fdd72bc4619", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "293T_1_i_S_R2.fastq", "size": "2536917572", "date": "2024-12-20 09:15:29", "md5": "b77c4821d691f8133b62ddc58269e79c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR31790502", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR31790502/SRR31790502", "size": "762623151", "date": "2024-12-20 09:15:46", "md5": "858021a1bcb5e883042319c6239f1857", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR31790502.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/SRR031/31790/SRR31790502/SRR31790502.lite.1", "size": "547460451", "date": "2024-12-20 13:31:10", "md5": "ff606f1620328dddfc16b5378aa881f8", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]