EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04187
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04187"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2020-11-04"}, {"TAG": "geo_loc_name", "VALUE": "Bangladesh"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Bengali"}, {"TAG": "family_id", "VALUE": "BD62"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04187-04a-2_S4_L003_R1_001.fastq.gz", "size": "4258355626", "date": "2024-09-10 03:46:30", "md5": "ed1416cdfef1439e237b5f10ec4f69b2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04187-04a-2_S4_L003_R2_001.fastq.gz", "size": "4343098380", "date": "2024-09-10 03:46:42", "md5": "19982340ac53818e8f14ee1cf2ffbcd1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613590", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613590/SRR30613590", "size": "5731198545", "date": "2024-09-10 03:47:52", "md5": "77dd9999651d3ce23b1abd1c641af714", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613590.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613590/SRR30613590.lite.1", "size": "3990372773", "date": "2024-09-10 04:38:53", "md5": "35d7b45bebe408e6bd078a75eaea937a", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]