EXPERIMENT_TITLE: GSM4206383: Choudhary-2018-TW_HIC205; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) in situ HiC, in situ HiC^2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Co-option of transposable elements maintains conserved 3D genome structures via CTCF binding site turnover in human and mouse. Overall design: in situ HiC and in situ Hybrid-capture HiC (HiC^2) were generated for L1M3f-del and LTR41-del GM12878 cell lines
SAMPLE_TITLE: Choudhary-2018-TW_HIC205
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "GM12878 cell line"}, {"TAG": "strain", "VALUE": "L1M3f deletion"}, {"TAG": "gender", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "blood lymphoblastoid"}]
Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC205
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC205
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC205_R1.fastq.gz", "size": "643222555", "date": "2019-12-06 06:38:38", "md5": "9b58d3523f30a162c7ce0e4bf638791c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC205_R2.fastq.gz", "size": "664285428", "date": "2019-12-06 06:38:50", "md5": "e51e30cc7d1ff115ae9d84a29ed4c7ca", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR10597512", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10597512/SRR10597512", "size": "928743872", "date": "2019-12-06 06:39:13", "md5": "db8f1f28ba77264c83e4e90d5cc5275e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR10597512.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR010/597/SRR10597512.sralite.1", "size": "674492240", "date": "2020-06-24 01:27:12", "md5": "dd7cafe55d9e1d309f7d8681ffc9aac0", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]