EXPERIMENT_TITLE: PATU8988T Hi-C
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We sequenced the Hi-C libraries generated from PANC-1, Panc10.05, PATU-8988T and PATU-8988S cell lines to study the genomic interactions and enhancer hijacking events in these cells.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "patient"}, {"TAG": "age", "VALUE": "64"}, {"TAG": "biomaterial_provider", "VALUE": "DSMZ"}, {"TAG": "collection_date", "VALUE": "2023-04"}, {"TAG": "geo_loc_name", "VALUE": "USA"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "liver metastasis"}, {"TAG": "cell_line", "VALUE": "PATU-8988T"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "PATU8988T_CKDL230019753-1A_225MCVLT3_L3_2.fq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR26685715/PATU8988T_CKDL230019753-1A_225MCVLT3_L3_2.fq.gz.1", "size": "80024235049", "date": "2023-11-06 20:49:32", "md5": "b94cb73a482de59dfcfb35063dcd8b2a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "PATU8988T_CKDL230019753-1A_225MCVLT3_L3_1.fq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR26685715/PATU8988T_CKDL230019753-1A_225MCVLT3_L3_1.fq.gz.1", "size": "79115750714", "date": "2023-11-06 20:56:09", "md5": "8bde515b636b26f6dd057a99472960b5", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]