EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02809
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02809
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02809"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Gambian in Western Division, The Gambia - Mandinka"}, {"TAG": "family id", "VALUE": "GB63"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02809
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-1_S3_L004_R1_001.fastq.gz", "size": "22224658979", "date": "2024-09-10 04:51:49", "md5": "3e95bf972f2667155a1ba83778e26298", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02809-52d-1_S3_L004_R2_001.fastq.gz", "size": "25974395716", "date": "2024-09-10 04:53:21", "md5": "9387c5f18f9615d391ae08ec095f3fd4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613760", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613760/SRR30613760", "size": "32832044629", "date": "2024-09-10 05:01:25", "md5": "a1d2da7d3f1166885e97a155b0dc51b9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613760.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613760/SRR30613760.lite.1", "size": "21816363877", "date": "2024-09-10 06:31:02", "md5": "0f11477186d23d13118ee182b726fdb2", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]