EXPERIMENT_TITLE: GSM2830543: MYC primer R2 biological rep2 technical rep 2 in MCF7 UMI-4C; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: described in doi:10.1038/nmeth.3922 (2016) Truseq adaptor ligation/PCR
STUDY_DESCRIPTOR_STUDY_ABSTRACT: MYC-PVT1 interaction is cell line specific Overall design: Interactions were measured with UMI-4C by two technical replicates for two biological replicates (with 2 different anchor point, two primers for each anchor).
SAMPLE_TITLE: MYC primer R2 biological rep2 technical rep 2 in MCF7 UMI-4C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "MCF7 cell line"}, {"TAG": "cell line", "VALUE": "MCF7"}, {"TAG": "primer_us", "VALUE": "GTTGCACAATGGCAGAGACC"}, {"TAG": "primer_ds", "VALUE": "CTCTAAGGGCCAATTTGTATTGTG"}]
Pool_Member_@attributes_sample_title: MYC primer R2 biological rep2 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MYC primer R2 biological rep2 technical rep 2 in MCF7 UMI-4C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-R2-MCF-R2-rep2_S88_conc_R2_001.fastq.gz", "size": "3534948", "date": "2020-03-17 05:14:28", "md5": "c7b55d0ee067c399ebaa2b9cf5a7ce29", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6216930", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6216930/SRR6216930", "size": "4149848", "date": "2017-10-25 17:44:35", "md5": "836a918d3e1eed3f2d7e87264b6fba8a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6216930.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/216/SRR6216930.sralite.1", "size": "2503492", "date": "2020-06-20 09:52:36", "md5": "d87d05d0f2c6d1423add06f88551b95b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MYC-R2-MCF-R2-rep2_S88_conc_R1_001.fastq.gz", "size": "2714884", "date": "2020-03-17 02:53:11", "md5": "24a8633242a7d6e3cf56e6c135039ac2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]