EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00544
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG00544
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00544"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Han Chinese South"}, {"TAG": "family id", "VALUE": "SH042"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG00544
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG00544
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00544-24ab-1_S1_L004_R1_001.fastq.gz", "size": "12792809335", "date": "2024-09-10 04:14:09", "md5": "2099e3f50a68648ee66d81c094421096", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00544-24ab-1_S1_L004_R2_001.fastq.gz", "size": "13350551457", "date": "2024-09-10 04:14:48", "md5": "318623c878ce77ec8ba589b1f343d65f", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613916", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613916/SRR30613916", "size": "17424592382", "date": "2024-09-10 04:20:16", "md5": "fddf123f0dd1f9bd84564c3da0056e5a", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613916.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613916/SRR30613916.lite.1", "size": "12743112194", "date": "2024-09-10 04:48:39", "md5": "c5023ad8f22fad2c0ebfa9432868cb4c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]