EXPERIMENT_TITLE: GSM4206379: Choudhary-2018-TW_HIC201; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) As detailed in In situ Hi-C: Protocol and Quality Control Standards, 4D Nucleome Consortium (https://drive.google.com/file/d/1wEAR_yGKMFBZ6BQ6CRRtBa8USYdRZahM/view) in situ HiC, in situ HiC^2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Co-option of transposable elements maintains conserved 3D genome structures via CTCF binding site turnover in human and mouse. Overall design: in situ HiC and in situ Hybrid-capture HiC (HiC^2) were generated for L1M3f-del and LTR41-del GM12878 cell lines
SAMPLE_TITLE: Choudhary-2018-TW_HIC201
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "GM12878 cell line"}, {"TAG": "strain", "VALUE": "L1M3f WT"}, {"TAG": "gender", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "blood lymphoblastoid"}]
Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC201
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Choudhary-2018-TW_HIC201
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC201_R1.fastq.gz", "size": "545609827", "date": "2019-12-06 06:37:40", "md5": "a36a7d0fee8ddeb8f69acd7b71a6615c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "Choudhary-2018-TW_HIC201_R2.fastq.gz", "size": "567875412", "date": "2019-12-06 06:37:51", "md5": "8b397d1111d17e49c367612fc867ea43", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR10597508", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR10597508/SRR10597508", "size": "789187214", "date": "2019-12-06 06:38:12", "md5": "6596014d3566e32cb1f2f099689a2fdd", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR10597508.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR010/597/SRR10597508.sralite.1", "size": "563120026", "date": "2020-06-21 13:10:07", "md5": "36aa632bdfa4f8a3c7de55f5e96092ff", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]