EXPERIMENT_TITLE: MEC-1R rep1 Hi-C
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal of this study is to investigate the changes between ibrutinib-resistant CLL cells and parental cells. Multi-omics were used to explore the changes of MEC-1R cells from DNA, RNA and protein levels. Hi-C, ATAC-seq, RNA-seq and TMT were performed in this project.
SAMPLE_TITLE: MEC-1R rep1 Hi-C
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "not applicable"}, {"TAG": "age", "VALUE": "not applicable"}, {"TAG": "biomaterial_provider", "VALUE": "not applicable"}, {"TAG": "sex", "VALUE": "not applicable"}, {"TAG": "tissue", "VALUE": "not applicable"}, {"TAG": "cell_line", "VALUE": "MEC-1R"}, {"TAG": "treatment", "VALUE": "ibrutinib-resistant"}, {"TAG": "file1", "VALUE": "MEC1-R1_R1.fq.gz"}, {"TAG": "file2", "VALUE": "MEC1-R1_R2.fq.gz"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: MEC-1R rep1 Hi-C
RUN_SET_RUN_Pool_Member_@attributes_sample_title: MEC-1R rep1 Hi-C
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15049544.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/SRR015/15049/SRR15049544/SRR15049544.lite.1", "size": "37717819517", "date": "2022-09-09 12:26:36", "md5": "af993eeaff5e4171d87280a52aba05b4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15049544", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15049544/SRR15049544", "size": "48613717325", "date": "2021-07-07 06:51:57", "md5": "fffe535c9f6868c006863ad9746c2762", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1-R1_R2.fq.gz", "size": "35263960632", "date": "2021-07-07 06:36:50", "md5": "9cb0b764d75acaaf6ccb670797aa21cc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MEC1-R1_R1.fq.gz", "size": "33368318916", "date": "2021-07-07 06:29:13", "md5": "2bfa07dde8719f2a3ef7dd6f9c72cad2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]