EXPERIMENT_TITLE: GSM7646185: intact Hi-C from MCF-7 (ENCLB761AOJ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS885VEP
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS885VEP"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "MCF-7"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "health state", "VALUE": "breast cancer (adenocarcinoma)"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "69 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000AAE"}, {"TAG": "lab", "VALUE": "Mats Ljungman, UMichigan"}, {"TAG": "source", "VALUE": "ATCC"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS885VEP
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS885VEP
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF058HEB.fastq.gz", "size": "146765506659", "date": "2023-08-11 08:50:55", "md5": "19c2302fb144818187f7efafafab7636", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419779", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419779/SRR25419779", "size": "114899995205", "date": "2023-08-11 09:23:28", "md5": "051441bc1f4f7a8eb426f583dc488974", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419779.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419779/SRR25419779.lite.1", "size": "56634691523", "date": "2023-08-16 10:47:38", "md5": "b03178480b0b4677ee8e0a650c2a6fb6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]