EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00408
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00408"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Southern Han Chinese, China"}, {"TAG": "family id", "VALUE": "SH002"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00408-1_S4_L002_R1_001.fastq.gz", "size": "41302201960", "date": "2024-06-26 09:05:35", "md5": "86efb553e864208cb3380b449329ab17", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00408-1_S4_L002_R2_001.fastq.gz", "size": "43355747776", "date": "2024-06-26 09:07:45", "md5": "8ea4bf2a95b60e425f397c0fb9198984", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552856", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552856/SRR29552856", "size": "56905487878", "date": "2024-06-26 09:22:58", "md5": "a05c3bd3281c3497bcd1977ceb075218", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552856.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552856/SRR29552856.lite.1", "size": "38285435354", "date": "2024-06-26 09:59:54", "md5": "40318fd89f2755b69e393240378c20b6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]