EXPERIMENT_TITLE: GSM2828695: Hi-C from SK-N-MC (ENCLB914GYK); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: not provided
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors.  For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.
SAMPLE_TITLE: ENCODE biosample ENCBS400ENC: Please note: This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing''s Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "sex", "VALUE": "female"}, {"TAG": "cell line", "VALUE": "SK-N-MC"}, {"TAG": "lab", "VALUE": "John Stamatoyannopoulos, UW"}, {"TAG": "sample_type", "VALUE": "immortalized cell line"}, {"TAG": "health state", "VALUE": "Ewing''s sarcoma"}, {"TAG": "age", "VALUE": "14 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABC"}, {"TAG": "dev_stage", "VALUE": "child"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS400ENC: Please note: This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing''s Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS400ENC: Please note: This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing''s Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR6214075", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR6214075/SRR6214075", "size": "11775431089", "date": "2017-10-25 10:40:46", "md5": "ccae94953ea74be1a4faea07ab864472", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR6214075.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR006/214/SRR6214075.sralite.1", "size": "4763561841", "date": "2020-06-20 13:11:47", "md5": "e575bf565f270ab9138e413d6606eed4", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF811IQJ.fastq.gz", "size": "9453149074", "date": "2020-03-19 11:29:39", "md5": "ba6abdc5378927ff2ef2e4cd05225a86", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF253NHH.fastq.gz", "size": "9406916613", "date": "2020-03-19 12:05:03", "md5": "1d6290370145a6b4e8d3b5d21c574646", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]