EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03458
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03458"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-03-30"}, {"TAG": "geo_loc_name", "VALUE": "Sierra Leone"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "SIERRA LEONE"}, {"TAG": "family_id", "VALUE": "SL52"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03458-1_S17_L002_R1_001.fastq.gz", "size": "4161206436", "date": "2024-08-14 21:01:34", "md5": "9664c99f97b7ee8d0ed260d63c310352", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03458-1_S17_L002_R2_001.fastq.gz", "size": "4366270949", "date": "2024-08-14 21:01:23", "md5": "7997e89fe977b8f3a663972561fff08d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242227", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242227/SRR30242227", "size": "5730274188", "date": "2024-08-14 21:03:33", "md5": "1d8ccb43096da41635e8e227f0ccbe66", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242227.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242227/SRR30242227.lite.1", "size": "3918351224", "date": "2024-08-14 22:41:42", "md5": "02865cca92bde1c55f815ec1ccee6be6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]