EXPERIMENT_TITLE: GSM5534676: Hi-c DND41 USP7i  replicate 1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Biotinylated DNA was extracted with Arima-HiC kit enrichment beads Libraries were prepared using the KAPA® Hyper Prep Kit for Illmina®
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We report chromatin organization changes in DND41 cells upon USP7 inhibitor with or without dexamethasone. DND41 cells were treated with USP7 inhibitor with or without dexamethasone. ATAC-seq were performed to detect chromatin organization change Overall design: Examination of chromatinorganization in DND41 cells
SAMPLE_TITLE: Hi-c DND41 USP7i replicate 1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "DND41"}, {"TAG": "cell type", "VALUE": "human T cell leukemia cells"}]
Pool_Member_@attributes_sample_title: Hi-c DND41 USP7i replicate 1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-c DND41 USP7i replicate 1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15598690.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR015/15598/SRR15598690/SRR15598690.lite.1", "size": "34228165381", "date": "2022-12-13 17:34:53", "md5": "7e13b8ab23f182894e384221d13cc6f1", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15598690", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15598690/SRR15598690", "size": "52552562745", "date": "2021-08-24 22:59:21", "md5": "ffb3121094d3a1832b0f60ccd2631377", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-09-03-01_S74_L007_R2_001.fastq.gz", "size": "40699237402", "date": "2021-08-24 22:03:49", "md5": "4dc3cfe61788674b8722f4306feb8123", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-09-03-01_S74_L007_R1_001.fastq.gz", "size": "36841015399", "date": "2021-08-24 22:21:28", "md5": "fb9b045a355633db7c3f1ef655b5b6e3", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]