EXPERIMENT_TITLE: GSM7658006: intact Hi-C from mucosa of descending colon (ENCLB398AEX); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS995QYA
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS995QYA"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "mucosa of descending colon"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "DM: no; HTN: yes; CAD: no"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "40 year"}, {"TAG": "donor ID", "VALUE": "ENCDO392CRK"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "source", "VALUE": "Yiing Lin, MD, PhD"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS995QYA
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS995QYA
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF949BXI.fastq.gz", "size": "240835219481", "date": "2023-08-11 20:19:14", "md5": "3b8d334b9936960be2d8ee5c8f973e57", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25420077", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25420077/SRR25420077", "size": "196110930084", "date": "2023-08-11 21:20:20", "md5": "e3370d467dafcdec0721e9cceef229e9", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25420077.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25420/SRR25420077/SRR25420077.lite.1", "size": "88092567558", "date": "2023-08-17 01:28:59", "md5": "d41b95696e4f3116a519178f3f14762f", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]