EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02258
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02258"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "African Caribbean in Barbados"}, {"TAG": "family id", "VALUE": "BB22"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02258-2_S7_L003_R1_001.fastq.gz", "size": "31485414646", "date": "2024-08-22 05:26:45", "md5": "cf4af4cd0ffe93bb5e9a4110bf82817b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02258-2_S7_L003_R2_001.fastq.gz", "size": "33055368083", "date": "2024-08-22 05:17:19", "md5": "cddf72868b65936ef75fda8f5fdec08d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310885", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310885/SRR30310885", "size": "43822580684", "date": "2024-08-22 06:05:41", "md5": "fa72c7ff904559d6e2d564e31ab90540", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310885.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310885/SRR30310885.lite.1", "size": "28018090580", "date": "2024-08-22 07:04:55", "md5": "24daec519ff3879f5ea15fece4acbcdc", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]