EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03874
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03874"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2022-10-25"}, {"TAG": "geo_loc_name", "VALUE": "United Kingdom"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552772.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552772/SRR29552772.lite.1", "size": "8890502270", "date": "2024-06-26 08:19:16", "md5": "942da7ed1780161ccadc79386e468654", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552772", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552772/SRR29552772", "size": "13623304262", "date": "2024-06-26 07:48:51", "md5": "a4d79144b3c6b27688d39b538c73a46e", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03874-2_FC2_S4_L001_R1_001.fastq.gz", "size": "9998040311", "date": "2024-06-26 07:43:37", "md5": "fb420700bd3d4b2d1a1ca73dbec0ac72", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03874-2_FC1_S4_L001_R2_001.fastq.gz", "size": "10272267183", "date": "2024-06-26 07:41:15", "md5": "a84e4945afc15822c75fbbe629c656ce", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]