EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA18508
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA18508"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2023-02-07"}, {"TAG": "geo_loc_name", "VALUE": "Nigeria"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18508-1_FC1_S7_L002_R2_001.fastq.gz", "size": "9954377571", "date": "2024-06-26 07:36:36", "md5": "e66dab9e32c5968ea9c1abcfc74760e5", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18508-1_FC2_S7_L002_R1_001.fastq.gz", "size": "9701767587", "date": "2024-06-26 07:37:01", "md5": "6f925b5f5f089602871fc80915189875", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR29552822", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR29552822/SRR29552822", "size": "13197689584", "date": "2024-06-26 07:37:50", "md5": "fb5554957073e058c42056c51d57837f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR29552822.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR029/29552/SRR29552822/SRR29552822.lite.1", "size": "8744094124", "date": "2024-06-26 08:20:12", "md5": "d45b124fd457f90206beee2828dd6eb6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]