EXPERIMENT_TITLE: GSM6463429: NP69SV40T_WT; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547). Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We comprehensively analysed chromatin interactions in UPCI-SCC-090, UM-SCC-47, UM-SCC-104, FaDu and NP69SV40T by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C
SAMPLE_TITLE: NP69SV40T_WT
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "nasopharyngeal epithelial cell line"}, {"TAG": "cell line", "VALUE": "NP69T"}, {"TAG": "cell type", "VALUE": "nasopharyngeal epithelial cell line"}, {"TAG": "restricion enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: NP69SV40T_WT
RUN_SET_RUN_Pool_Member_@attributes_sample_title: NP69SV40T_WT
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR21069566.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR021/21069/SRR21069566/SRR21069566.lite.1", "size": "49064938580", "date": "2022-10-12 21:03:54", "md5": "1d510abae66666907af9954292d76fe3", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR21069566", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR21069566/SRR21069566", "size": "66488509488", "date": "2022-08-16 00:57:11", "md5": "abd704978dc34e7ee06ea81ddf6ae5e0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NP69T_R2.fastq.gz", "size": "53651190760", "date": "2022-08-16 00:37:49", "md5": "4a452cebff62eae218c92cd7468dbcaa", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NP69T_R1.fastq.gz", "size": "50469664373", "date": "2022-08-16 00:40:50", "md5": "1b53b2bed0dfd7bceb137c96af336511", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]