EXPERIMENT_TITLE: GSM5534675: Hi-c DND41 Control  replicate 2; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Biotinylated DNA was extracted with Arima-HiC kit enrichment beads Libraries were prepared using the KAPA® Hyper Prep Kit for Illmina®
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We report chromatin organization changes in DND41 cells upon USP7 inhibitor with or without dexamethasone. DND41 cells were treated with USP7 inhibitor with or without dexamethasone. ATAC-seq were performed to detect chromatin organization change Overall design: Examination of chromatinorganization in DND41 cells
SAMPLE_TITLE: Hi-c DND41 Control replicate 2
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "DND41"}, {"TAG": "cell type", "VALUE": "human T cell leukemia cells"}]
Pool_Member_@attributes_sample_title: Hi-c DND41 Control replicate 2
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-c DND41 Control replicate 2
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-11-01_S92_L004_R1_001.fastq.gz", "size": "38502210102", "date": "2021-08-24 21:10:09", "md5": "ef23dc140cb5591986dafbf08c16970a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "18027FL-11-01_S92_L004_R2_001.fastq.gz", "size": "42723138907", "date": "2021-08-24 21:27:22", "md5": "266f9ee85fff1c21f67519b7fa7f69be", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR15598689", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15598689/SRR15598689", "size": "54978246086", "date": "2021-08-24 22:14:09", "md5": "603159643a74ac43f144e585d8a63678", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR15598689.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR015/15598/SRR15598689/SRR15598689.lite.1", "size": "36974532598", "date": "2022-10-28 05:56:44", "md5": "089345c24f114cad9c2b2f6d4887c6ed", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]