EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02004
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG02004
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02004"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Peruvian in Lima, Peru"}, {"TAG": "family id", "VALUE": "PEL33"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG02004
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-2_S20_L002_R1_001.fastq.gz", "size": "8486823955", "date": "2024-09-10 03:53:34", "md5": "ee25e51d78201cf2e4dc94fffa7d65e2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02004-41a-2_S20_L002_R2_001.fastq.gz", "size": "8920033535", "date": "2024-09-10 03:53:56", "md5": "be6e09f512f2554c2b3871713399c44a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613908", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613908/SRR30613908", "size": "11615984277", "date": "2024-09-10 03:57:54", "md5": "4915fdd421021796e767f94f0dec84a0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613908.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613908/SRR30613908.lite.1", "size": "8361247777", "date": "2024-09-10 04:46:42", "md5": "a3986598779d1c075f3e676c51a51314", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]