EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG02841
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG02841"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "NHGRI Sample Repository for Human Genetic Research at the Coriell Institute"}, {"TAG": "collection_date", "VALUE": "2021-03-16"}, {"TAG": "geo_loc_name", "VALUE": "Gambia"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "GAMBIAN"}, {"TAG": "family_id", "VALUE": "GB74"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02841-1_S5_L001_R1_001.fastq.gz", "size": "18589362730", "date": "2024-08-22 00:30:05", "md5": "3667f842acecf1b44aa0f399119e06ea", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG02841-1_S5_L001_R2_001.fastq.gz", "size": "19474293839", "date": "2024-08-22 00:25:56", "md5": "7b7fb6e1a0b1477e7b7a56d9058e97c0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30310825", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30310825/SRR30310825", "size": "25867243906", "date": "2024-08-22 00:46:12", "md5": "7e4e2ba539c770f0593541998fc2d273", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30310825.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30310/SRR30310825/SRR30310825.lite.1", "size": "16374954786", "date": "2024-08-22 03:02:45", "md5": "2ea9c3e5484e7bc85da3f776e782db14", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]