EXPERIMENT_TITLE: IMR-5/75 Shallow Hi-C Technical Replicate 2
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Illumina WGS, Nanopore WGS, Hi-C, MYCN-anchored 4C-seq, ATAC-seq and ChIP-seq data for MYCN-amplified neuroblastoma cell lines (Kelly, NGP, IMR-5/75 and CHP-212).
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA"}, {"TAG": "age", "VALUE": "1Y1M"}, {"TAG": "biomaterial_provider", "VALUE": "Frank Westermann, German Cancer Research Center, Heidelberg, Germany"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "neuroblastoma"}, {"TAG": "disease", "VALUE": "neuroblastoma"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR11467544.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR011/467/SRR11467544/SRR11467544.lite.1", "size": "1177807822", "date": "2022-07-10 07:47:49", "md5": "2e80b93cb6e4400644ab94d6e66b342d", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR11467544", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR11467544/SRR11467544", "size": "2318589286", "date": "2020-04-02 09:48:59", "md5": "fd7389e452b1e582147f32c1f85c2692", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "IMR575_ShallowHiC_TechnRep2_R2.fastq.gz", "size": "1851012969", "date": "2020-04-02 09:36:02", "md5": "535870f9b021896e74d314c4fb4f7565", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "IMR575_ShallowHiC_TechnRep2_R1.fastq.gz", "size": "1452209386", "date": "2020-04-02 09:25:09", "md5": "119a2c8b20bdbeeab9c521dbae58234a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]