EXPERIMENT_TITLE: GSM7610441: intact Hi-C from activated CD4-positive, alpha-beta T cell (ENCLB050GOB); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS949CQQ
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS949CQQ"}, {"TAG": "sample type", "VALUE": "primary cell"}, {"TAG": "cell type", "VALUE": "activated CD4-positive, alpha-beta T cell"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "20 year"}, {"TAG": "donor ID", "VALUE": "ENCDO394DKX"}, {"TAG": "lab", "VALUE": "Yijun Ruan, JAX"}, {"TAG": "source", "VALUE": "AllCells"}, {"TAG": "treatments", "VALUE": "treatment_term_name: anti-CD3 and anti-CD28 coated beads; treatment_type: antibody; duration: 36; duration_units: hour;"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS949CQQ
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS949CQQ
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF092IWT.fastq.gz", "size": "71946329208", "date": "2023-08-24 20:07:01", "md5": "969ca719b4172406888913590bfb4bd5", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419579", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419579/SRR25419579", "size": "69105327334", "date": "2023-08-24 20:18:12", "md5": "2124b1eb7f76fe76a6c7efb377f36020", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419579.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/SRR025/25419/SRR25419579/SRR25419579.lite.1", "size": "38491741234", "date": "2023-08-29 22:37:11", "md5": "6b7c9ec18b449626aebcc3782c2f9129", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]