EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG03942
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG03942
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG03942"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Bengali in Bangladesh"}, {"TAG": "family id", "VALUE": "BD42"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG03942
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG03942
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03942-03b-1_S17_L003_R1_001.fastq.gz", "size": "4177436212", "date": "2024-09-10 03:46:18", "md5": "f15a715852f20c0618ae909f3bed9c7b", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG03942-03b-1_S17_L003_R2_001.fastq.gz", "size": "4147259547", "date": "2024-09-10 03:46:28", "md5": "f624df12704b6bcee28b0271cef26e57", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613750", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613750/SRR30613750", "size": "5586925779", "date": "2024-09-10 03:47:19", "md5": "840cc1074e4041721fa7e8926700ca95", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613750.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613750/SRR30613750.lite.1", "size": "3890316451", "date": "2024-09-10 04:39:54", "md5": "4e41a1ab1f879494b073068efb1e6069", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]