EXPERIMENT_TITLE: GSM7656183: intact Hi-C from upper lobe of right lung (ENCLB199RLJ); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS562NYH
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS562NYH"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "upper lobe of right lung"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "DM: no; HTN: yes; CAD: no; lungs with severe emphysema"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "60 year"}, {"TAG": "donor ID", "VALUE": "ENCDO520EJG"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "source", "VALUE": "Yiing Lin, MD, PhD"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS562NYH
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS562NYH
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF152LPE.fastq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR25419879/ENCFF152LPE.fastq.gz.1", "size": "152965679736", "date": "2023-08-11 10:50:15", "md5": "6f669549338459863788932609a9eccc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419879", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419879/SRR25419879", "size": "123351695454", "date": "2023-08-11 11:22:10", "md5": "2584300952f87cd7e0e254af62b06fbb", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419879.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-18/SRR025/25419/SRR25419879/SRR25419879.lite.1", "size": "68193059958", "date": "2023-08-16 12:09:44", "md5": "923922e81626cbbd9b11cdd70a328448", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]