EXPERIMENT_TITLE: GSM3591811: Activated CD8+ T cells 1 HiC; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: In situ Hi-C was performed as described by Rao et al (Cell 2014; PMID: 25497547).
STUDY_DESCRIPTOR_STUDY_ABSTRACT: CD4+ T cells and CD8+ T cells were isolated from the peripheral blood of two human donors and were cultured to induce activation. High-throughput chromosome confirmation capture (Hi-C) was used to examine DNA interactions between chromosomes. Overall design: Cells were isolated from two human donors, resulting in two biological replicates for cell type.
SAMPLE_TITLE: Activated CD8+ T cells 1 HiC
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood"}, {"TAG": "donor", "VALUE": "1"}, {"TAG": "cell type", "VALUE": "Activated CD8+ T lymphocyte cells"}]
Pool_Member_@attributes_sample_title: Activated CD8+ T cells 1 HiC
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Activated CD8+ T cells 1 HiC
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8534016.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR008/8534/SRR8534016/SRR8534016.lite.1", "size": "11526868477", "date": "2022-06-21 16:13:58", "md5": "e8ca570b32317425fa234e8684ff30f5", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8534016", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8534016/SRR8534016", "size": "16811706085", "date": "2019-02-05 16:32:48", "md5": "aef650c6b122b9d9cf143449e5eee783", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]