EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG00544
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG00544
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG00544"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Han Chinese South"}, {"TAG": "family id", "VALUE": "SH042"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG00544
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG00544
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00544-24ab-2_S2_L003_R1_001.fastq.gz", "size": "13553683916", "date": "2024-09-10 04:03:42", "md5": "6655d8bdc3867f31b10f8e25b645c9ca", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG00544-24ab-2_S2_L003_R2_001.fastq.gz", "size": "14428820451", "date": "2024-09-10 04:03:10", "md5": "93e8c499a23b5148ceed1c2e40a39218", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613787", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613787/SRR30613787", "size": "18628370073", "date": "2024-09-10 04:12:22", "md5": "c8cb110654e4b4799ee0aaf3f110e043", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613787.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613787/SRR30613787.lite.1", "size": "13611692985", "date": "2024-09-10 04:43:32", "md5": "6330178e6b99ca661fac431583ab274e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]