EXPERIMENT_TITLE: GSM7790584: K562_bio1_tech1_siNC; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: RNAs were extracted 48 h after transfection. About 300,000 C2C12 cells were cross-linked and processed to generate Hi-C libraries, following modifications of established protocols. Libraries underwent paired-end sequencing on an Illumina HiSeq X Ten instrument
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Hi-C in RBFox2 knockdown K562 and RBFox2 knockout C2C12 cells, Hi-C in ActD, RNase, and RNase inhibitor (RIN) treated C2C12 cells. Overall design: Hi-C
SAMPLE_TITLE: K562_bio1_tech1_siNC
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "K562"}, {"TAG": "cell line", "VALUE": "K562"}, {"TAG": "treatment", "VALUE": "siNC"}, {"TAG": "geo_loc_name", "VALUE": "missing"}, {"TAG": "collection_date", "VALUE": "missing"}]
Pool_Member_@attributes_sample_title: K562_bio1_tech1_siNC
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