EXPERIMENT_TITLE: PoreC sequencing of BL2009 human cell line
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal of this project is to provide a resource for the development of long- and short-read methods in cancer genomics. We sequenced several tumor cell lines and their corresponding matching normals - HCC1954, H2009, HCC1937, H1437, Hs578T - using Illumina, PacBio HiFi and ONT R10. For each cell line, all sequencing was produced from the same DNA extraction. In addition, we sequenced HCC1395/HCC1395BL with only ONT R10; and COLO829/COLO829BL with Illumina and ONTR9.
SAMPLE_TITLE: BL2009 B lymphoblast cell line
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "Anonymous"}, {"TAG": "age", "VALUE": "68"}, {"TAG": "biomaterial_provider", "VALUE": "American Type Culture Collection"}, {"TAG": "collection_date", "VALUE": "2022-09"}, {"TAG": "geo_loc_name", "VALUE": "USA"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "Peripheral blood"}, {"TAG": "cell_line", "VALUE": "BL2009"}, {"TAG": "cell_type", "VALUE": "B lymphoblast"}, {"TAG": "culture_collection", "VALUE": "ATCC:CRL-5961"}, {"TAG": "disease", "VALUE": "Normal"}, {"TAG": "ethnicity", "VALUE": "White"}, {"TAG": "sample_type", "VALUE": "Cell culture"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: BL2009 B lymphoblast cell line
RUN_SET_RUN_Pool_Member_@attributes_sample_title: BL2009 B lymphoblast cell line
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR31537471", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-run-38/SRR031/31537/SRR31537471/SRR31537471.1", "size": "65659787493", "date": "2024-11-27 19:06:52", "md5": "f7b01fc75dd7831e365fe3b42db9a774", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "BL2009_POREC_1.bam", "size": "79180563841", "date": "2024-11-27 18:21:37", "md5": "16b55e1dff321d9721c6327fa912b350", "version": "1", "semantic_name": "bam", "supertype": "Original", "sratoolkit": "0"}}]