EXPERIMENT_TITLE: Illumina HiSeq 4000 paired end sequencing; 4C-seq at iHUB regions in L3.6pl
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: 8 million cells were treated for 4 hours with vehicle or VIP152 (CDK9i). Then cells were trypsinized and crosslinked using 2% Formaldehyde for 10 minutes. Phenol/Chloroform DNA extraction Libraries were performed as described in Krijger et al
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Evaluation of interaction frequency in parental L3.6pl cells, paclitaxel-resistant cells and resistant cells treated with a CDK9 inhibitor
SAMPLE_TITLE: LIF iHUB Par veh 2
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENA-FIRST-PUBLIC", "VALUE": "2023-01-01"}, {"TAG": "ENA-LAST-UPDATE", "VALUE": "2023-01-01"}, {"TAG": "External Id", "VALUE": "SAMEA14382058"}, {"TAG": "INSDC center alias", "VALUE": "Mayo Clinic"}, {"TAG": "INSDC center name", "VALUE": "Mayo Clinic"}, {"TAG": "INSDC first public", "VALUE": "2023-01-01T00:28:00Z"}, {"TAG": "INSDC last update", "VALUE": "2023-01-01T00:28:00Z"}, {"TAG": "INSDC status", "VALUE": "public"}, {"TAG": "Submitter Id", "VALUE": "E-MTAB-11731:LIF iHUB Par veh 2"}, {"TAG": "broker name", "VALUE": "ArrayExpress"}, {"TAG": "cell_line", "VALUE": "L3.6pl"}, {"TAG": "common name", "VALUE": "human"}, {"TAG": "developmental stage", "VALUE": "adult"}, {"TAG": "disease", "VALUE": "pancreatic adenosquamous carcinoma"}, {"TAG": "genotype", "VALUE": "wild type genotype"}, {"TAG": "isolate", "VALUE": "not applicable"}, {"TAG": "organism part", "VALUE": "pancreatic duct"}, {"TAG": "phenotype", "VALUE": "paclitaxel sensitive"}, {"TAG": "sample name", "VALUE": "E-MTAB-11731:LIF iHUB Par veh 2"}, {"TAG": "sampling site", "VALUE": "cceliac lymph node"}]
Pool_Member_@attributes_sample_title: LIF iHUB Par veh 2
RUN_SET_RUN_Pool_Member_@attributes_sample_title: LIF iHUB Par veh 2
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "L36_veh_2_LIF_iHUB.FCHLLKMBBXY_L4_R1_ICGATGT.fastq.gz", "size": "319183929", "date": "2023-01-10 04:01:48", "md5": "02e64a118eb5a2e28cb782c1462a7fb4", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "L36_veh_2_LIF_iHUB.FCHLLKMBBXY_L4_R2_ICGATGT.fastq.gz", "size": "422160534", "date": "2023-01-10 04:01:55", "md5": "72965c9c081a4beb9d2ac0eb96825486", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ERR9723972", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/ERR9723972/ERR9723972", "size": "623199156", "date": "2023-01-10 04:02:19", "md5": "c0087aca964b594180701d2203df1c5b", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "ERR9723972.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-zq-20/ERR009/9723/ERR9723972/ERR9723972.lite.1", "size": "354274452", "date": "2023-01-10 04:28:41", "md5": "bf065cf05d643102ba7edb29b6b07d7e", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]