EXPERIMENT_TITLE: GSM3612253: US 2_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: US 2_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: US 2_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: US 2_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MD0815_index4_md1_S1_L001_R1.fastq.bz2", "size": "3090934140", "date": "2020-03-10 12:16:54", "md5": "ff6f528e68c6295a51051720dbdee904", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591511.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR008/591/SRR8591511.sralite.1", "size": "3971035741", "date": "2020-06-22 01:55:13", "md5": "1a15678bd61acee6c8eeb97bf74e9dc6", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591511", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591511/SRR8591511", "size": "6231938021", "date": "2019-02-19 14:39:56", "md5": "9c7096a2643b3ea1ed0b6bc085ba3ad0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "MD0815_index4_md1_S1_L001_R2.fastq.bz2", "size": "3481744995", "date": "2020-03-10 14:31:57", "md5": "cc51d7bba4f40257ea7fca114f261596", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]