EXPERIMENT_TITLE: GSM7645475: intact Hi-C from tibial artery (ENCLB117UVE); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS075UOY
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS075UOY"}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "tibial artery"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "53 year"}, {"TAG": "donor ID", "VALUE": "ENCDO793LXB"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Kristin Ardlie"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS075UOY
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419745", "SUBMITTER_ID": "GSM7645475_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417438", "EXTERNAL_ID": "SAMN35124145"}, "@attributes": {"member_name": "", "accession": "SRS18417438", "sample_name": "ENCODE biosample ENCBS075UOY", "sample_title": "ENCODE biosample ENCBS075UOY", "spots": "789406295", "bases": "229934535872", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419745.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR025/25419/SRR25419745/SRR25419745.lite.1", "size": "67985633812", "date": "2023-08-15 21:20:14", "md5": "fff547673f220c5cd4bccd4c0f674701", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419745", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419745/SRR25419745", "size": "152636186790", "date": "2023-08-10 20:02:25", "md5": "cafc8f87ea4cc659097b840a7d84eaa0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF752LLD.fastq.gz", "size": "122138782827", "date": "2023-08-10 19:15:29", "md5": "a6fb11557a7d8e47d0c0b6e07387c7f0", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "@attributes": {"alias": "GSM7645475_r1", "accession": "SRR25419745", "total_spots": "789406295", "total_bases": "229934535872", "size": "152636184933", "load_done": "true", "published": "2023-08-10 20:17:59", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419746", "SUBMITTER_ID": "GSM7645475_r2"}, "EXPERIMENT_REF": null, "SRAFiles": {"SRAFile": {"Alternatives": [null, null], "@attributes": {"cluster": "public", "filename": "ENCFF121GBL.fastq.gz", "url": "https://sra-pub-src-1.s3.amazonaws.com/SRR25419746/ENCFF121GBL.fastq.gz.1", "size": "211677901109", "date": "2023-08-10 06:11:38", "md5": "d765b3a24d1ff84939194ed377baa2c2", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}}, "CloudFiles": {"CloudFile": null}, "@attributes": {"alias": "GSM7645475_r2", "accession": "SRR25419746", "load_done": "true", "published": "2023-08-10 06:25:02", "is_public": "true", "cluster_name": "public", "static_data_available": "1"}}]