EXPERIMENT_TITLE: GSM6463428: FaDu_WT; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547). Hi-C experiment were conducted in biological replicates using MboI, according to the protocol published by Suhas S.P. Rao et al. Cell 2014 (PMID: 25497547).  DNA libraries were prepared during Hi-C protocol according to experimental procedures described in
STUDY_DESCRIPTOR_STUDY_ABSTRACT: We comprehensively analysed chromatin interactions in UPCI-SCC-090, UM-SCC-47, UM-SCC-104, FaDu and NP69SV40T by performing Hi-C. Overall design: Comprehensive chromatin conformational analysis using Hi-C
SAMPLE_TITLE: FaDu_WT
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "HPV(-) head and neck cancer cell line"}, {"TAG": "cell line", "VALUE": "FaDu"}, {"TAG": "cell type", "VALUE": "HPV(-) head and neck cancer cell line"}, {"TAG": "restricion enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: FaDu_WT
RUN_SET_RUN_Pool_Member_@attributes_sample_title: FaDu_WT
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR21069567.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR021/21069/SRR21069567/SRR21069567.lite.1", "size": "24208993260", "date": "2022-10-13 00:14:45", "md5": "8c09e02534a89879bdf9c825b21b2b78", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR21069567", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR21069567/SRR21069567", "size": "31490259564", "date": "2022-08-15 21:22:38", "md5": "1b73915e190f1d2ce734c205604bad9f", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FaDu_R2.fastq.gz", "size": "25098820280", "date": "2022-08-15 21:11:47", "md5": "2d27933b3fa2b79730eb06efa8d5874c", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "FaDu_R1.fastq.gz", "size": "24156632091", "date": "2022-08-15 21:10:24", "md5": "c033c37302b82f83bb08c0cb7facbbbc", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]