EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of NA18971
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "NA18971"}, {"TAG": "age", "VALUE": "No data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Japanese in Tokyo, Japan"}, {"TAG": "family id", "VALUE": "NA18971"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18971-1_S3_L002_R1_001.fastq.gz", "size": "6531037438", "date": "2024-08-14 21:06:35", "md5": "17f80789bdecfa631aead0da5a4184e1", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "NA18971-1_S3_L002_R2_001.fastq.gz", "size": "6814033389", "date": "2024-08-14 21:06:19", "md5": "5f23c84531b627ab6bfdb925cba43514", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30242520", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30242520/SRR30242520", "size": "8964490209", "date": "2024-08-14 21:20:19", "md5": "17c2845e36de9abe06a6240faaf0a9e4", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30242520.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30242/SRR30242520/SRR30242520.lite.1", "size": "6144985001", "date": "2024-08-14 22:52:03", "md5": "a4b79725057505b0a1591932f726c1b9", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]