EXPERIMENT_TITLE: Illumina NovaSeq 6000 sequencing; Raw reads: GM19240
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Identifying and cataloging the occurrence of structural variants (SVs)—including deletions, insertions,duplications, and inversions—in human chromosomes, comprehensive SV discovery in human chromosomes by combiningmultiple cutting-edge genome-analyzing technologies and computational tools to generate a novel SV referenceset encompassing ethnically diverse populations, which will serve as a valuable resource to clinicians andresearchers who investigate the causes of genetic diseases.
SAMPLE_TITLE: Coriell GM19240
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "DNA-ID", "VALUE": "NA19240"}, {"TAG": "population", "VALUE": "YRI"}, {"TAG": "Super Population Code", "VALUE": "AFR"}, {"TAG": "Coriell plate", "VALUE": "HAPMAPPT03"}, {"TAG": "Coriell panel", "VALUE": "MGP00013"}, {"TAG": "Population Description", "VALUE": "Yoruba in Ibadan, Nigeria"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "HapMap sample ID", "VALUE": "NA19240"}, {"TAG": "Super Population Description", "VALUE": "African"}, {"TAG": "culture_collection", "VALUE": "CORIELL:GM19240"}, {"TAG": "Family ID", "VALUE": "Y117-01"}, {"TAG": "family_id", "VALUE": "Y117"}, {"TAG": "fosmid library source", "VALUE": "ABC"}, {"TAG": "fosmid library name", "VALUE": "ABC10"}, {"TAG": "relationship", "VALUE": "Child"}]
Pool_Member_@attributes_sample_title: Coriell GM19240
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Coriell GM19240
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "ERR4501199.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-1/ERR004/4501/ERR4501199/ERR4501199.lite.1", "size": "17430546790", "date": "2022-09-11 03:03:52", "md5": "5d18b2fd92adf7c74635d1c7412556cd", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ERR4501199", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/ERR4501199/ERR4501199", "size": "23887939182", "date": "2020-09-18 14:56:12", "md5": "a57b6bb9eec2bf0b9179e45872e9e3a6", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}]