EXPERIMENT_TITLE: Illumina Sequencing of Omni-C Libraries of HG04199
STUDY_DESCRIPTOR_STUDY_ABSTRACT: This project contains genomic sequencing data generated for the Human Pangenome Reference Consortium (HPRC). Data types include, but are not limited to: PacBio HiFi, Oxford Nanopore, Hi-C/Omni-C. Data are used for assembly of genomes and pangenomes as well as assembly analysis and quality control.The Human Pangenome Reference Consortium aims to create a collection of high-quality reference genomes that represent the genetic diversity of the human population.
SAMPLE_TITLE: Human sample HG04199
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "HG04199"}, {"TAG": "age", "VALUE": "No Data"}, {"TAG": "biomaterial_provider", "VALUE": "Coriell Institute"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "tissue", "VALUE": "B-Lymphocyte"}, {"TAG": "population", "VALUE": "Sri Lankan Tamil in the UK"}, {"TAG": "family id", "VALUE": "ST203"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Human sample HG04199
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Human sample HG04199
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04199-20b-2_S18_L004_R1_001.fastq.gz", "size": "11688056381", "date": "2024-09-10 03:57:27", "md5": "e2333be9816ed6413d3ec96d85936be8", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "HG04199-20b-2_S18_L004_R2_001.fastq.gz", "size": "10904678700", "date": "2024-09-10 03:56:59", "md5": "3843e73c6ed9f93d5b7eb2b7e232e85d", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR30613579", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR30613579/SRR30613579", "size": "15377899076", "date": "2024-09-10 04:02:59", "md5": "00a7fd3e32296860460d96b37f749ce8", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR30613579.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos6/sra-pub-zq-40/SRR030/30613/SRR30613579/SRR30613579.lite.1", "size": "10199889064", "date": "2024-09-10 04:41:44", "md5": "8ae4818455408894471e9ca1c752337b", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]