EXPERIMENT_TITLE: GSM3612255: PMA 1.2_HiC_R1; Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: Nuclei isolation, chromatin digestion, nucleotide fill-in, ligation, and DNA purification were performed as detailed in Rao et al., Cell, 2014 - In situ HiC Library construction was performed as detailed in Rao et al., Cell, 2014 - In situ HiC
STUDY_DESCRIPTOR_STUDY_ABSTRACT: Human neutrophil genome during PMA- and E. coli encounter-induced activation Overall design: Hi-C
SAMPLE_TITLE: PMA 1.2_HiC_R1
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "source_name", "VALUE": "Peripheral blood neutrophils"}, {"TAG": "restriction enzyme", "VALUE": "MboI"}]
Pool_Member_@attributes_sample_title: PMA 1.2_HiC_R1
RUN_SET_RUN_Pool_Member_@attributes_sample_title: PMA 1.2_HiC_R1
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR8591513.sralite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR008/591/SRR8591513.sralite.1", "size": "1004491603", "date": "2020-06-23 12:00:17", "md5": "6421e824e8dd9f3805b5b25d736c83e8", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR8591513", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR8591513/SRR8591513", "size": "1787116975", "date": "2019-02-19 13:20:40", "md5": "f2bd9f68b13a6eaf391a27c3fe03b9b8", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_PMA_2_R2.fastq.gz", "size": "1361008106", "date": "2020-03-10 08:31:32", "md5": "826932c73008c17799bfb7626ab9a80e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "170328_hPMN_PMA_2_R1.fastq.gz", "size": "1126878850", "date": "2020-03-10 16:03:33", "md5": "cd6695cfcfb9600120b49302f4be9cbf", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]