EXPERIMENT_TITLE: Hi-C of HeLa-S3 UV-exposed, 12mins post-UV
STUDY_DESCRIPTOR_STUDY_ABSTRACT: The goal is to understand the effects of UV-exposure on the 3D genome architecture and transcriptional regulation. Accordingly, HeLa-S3 cells were cultured and exposed to 254-nm UV (1 J/m2/s) for 20 seconds. At the recovery time points of 12, 30 and 60 minutes post-UV, cells were harvested. A non-UV control group has been processed as well. Hi-C, and RNA-Seq techniques have been applied.
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "isolate", "VALUE": "ATCC"}, {"TAG": "age", "VALUE": "31"}, {"TAG": "biomaterial_provider", "VALUE": "Ozlem Kutlu, Orta Mah. Universite Cad. No: 27/1, 34956 Tuzla, Istanbul, Turkey"}, {"TAG": "collection_date", "VALUE": "not applicable"}, {"TAG": "geo_loc_name", "VALUE": "not applicable"}, {"TAG": "sex", "VALUE": "female"}, {"TAG": "tissue", "VALUE": "cervix"}, {"TAG": "cell_line", "VALUE": "HeLa S3"}, {"TAG": "health_state", "VALUE": "cervical adenocarcinoma"}, {"TAG": "sample_type", "VALUE": "Cell culture"}, {"TAG": "treatment", "VALUE": "UV"}, {"TAG": "method", "VALUE": "Hi-C"}, {"TAG": "rep", "VALUE": "1"}, {"TAG": "uv_exposure", "VALUE": "254-nm UV (20 J/m2)"}, {"TAG": "sample_descriptive_id", "VALUE": "hic_12"}, {"TAG": "BioSampleModel", "VALUE": "Human"}]
Pool_Member_@attributes_sample_title: Hi-C,12minutes post-UV
RUN_SET_RUN_Pool_Member_@attributes_sample_title: Hi-C,12minutes post-UV
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