EXPERIMENT_TITLE: GSM7622032: intact Hi-C from left ventricle myocardium superior (ENCLB894AKT); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS072DDV
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS072DDV"}, {"TAG": "note", "VALUE": "Superior wall of left ventricle."}, {"TAG": "sample type", "VALUE": "tissue"}, {"TAG": "tissue", "VALUE": "left ventricle myocardium superior"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "DM: no; HTN: yes; CAD: no; lungs with severe emphysema"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "60 year"}, {"TAG": "donor ID", "VALUE": "ENCDO520EJG"}, {"TAG": "lab", "VALUE": "Michael Snyder, Stanford"}, {"TAG": "source", "VALUE": "Yiing Lin, MD, PhD"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS072DDV
RUN_SET_RUN: [{"IDENTIFIERS": {"PRIMARY_ID": "SRR25419685", "SUBMITTER_ID": "GSM7622032_r1"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417419", "EXTERNAL_ID": "SAMN35124144"}, "@attributes": {"member_name": "", "accession": "SRS18417419", "sample_name": "ENCODE biosample ENCBS072DDV", "sample_title": "ENCODE biosample ENCBS072DDV", "spots": "683241592", "bases": "136333391124", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF281ZJI.fastq.gz", "size": "109607127198", "date": "2023-08-07 13:20:29", "md5": "448844516136bcc631e47e3cc2dda4be", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419685", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419685/SRR25419685", "size": "89795534661", "date": "2023-08-07 13:40:50", "md5": "479975a0646c1095246aa175894d6375", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419685.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419685/SRR25419685.lite.1", "size": "43727451751", "date": "2023-08-12 16:08:08", "md5": "192ba8c27c654bb06576d9d8a2b259db", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "683241592"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "136333391124"}}, "@attributes": {"alias": "GSM7622032_r1", "accession": "SRR25419685", "total_spots": "683241592", "total_bases": "136333391124", "size": "89795532801", "load_done": "true", "published": "2023-08-07 14:22:07", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}, {"IDENTIFIERS": {"PRIMARY_ID": "SRR25419686", "SUBMITTER_ID": "GSM7622032_r2"}, "EXPERIMENT_REF": null, "Pool": {"Member": {"IDENTIFIERS": {"PRIMARY_ID": "SRS18417419", "EXTERNAL_ID": "SAMN35124144"}, "@attributes": {"member_name": "", "accession": "SRS18417419", "sample_name": "ENCODE biosample ENCBS072DDV", "sample_title": "ENCODE biosample ENCBS072DDV", "spots": "399575024", "bases": "93795781783", "tax_id": "9606", "organism": "Homo sapiens"}}}, "SRAFiles": {"SRAFile": [{"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419686", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419686/SRR25419686", "size": "55726348150", "date": "2023-08-07 09:30:09", "md5": "5d940d7d200f8a5b9091f281d5d6d9bc", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419686.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos4/sra-pub-zq-5/SRR025/25419/SRR25419686/SRR25419686.lite.1", "size": "28989104990", "date": "2023-08-12 10:35:17", "md5": "647ab9c2cfc6a716a7566faec643162c", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF426ZRB.fastq.gz", "size": "68562192211", "date": "2023-08-07 09:05:46", "md5": "39bbf978684a4bd5d08f708d8ca5b56a", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]}, "CloudFiles": {"CloudFile": [null, null, null, null]}, "Statistics": {"Read": null, "@attributes": {"nreads": "1", "nspots": "399575024"}}, "Databases": {"Database": {"Table": {"Statistics": {"Rows": null, "Elements": null, "@attributes": {"source": "meta"}}, "@attributes": {"name": "SEQUENCE"}}}}, "Bases": {"Base": [null, null, null, null, null], "@attributes": {"cs_native": "false", "count": "93795781783"}}, "@attributes": {"alias": "GSM7622032_r2", "accession": "SRR25419686", "total_spots": "399575024", "total_bases": "93795781783", "size": "55726346288", "load_done": "true", "published": "2023-08-07 10:47:17", "is_public": "true", "cluster_name": "public", "has_taxanalysis": "1", "static_data_available": "1"}}]