EXPERIMENT_TITLE: GSM7610338: intact Hi-C from HCT116 (ENCLB204RPR); Homo sapiens; Hi-C
EXPERIMENT_DESIGN_LIBRARY_DESCRIPTOR_LIBRARY_CONSTRUCTION_PROTOC: general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
SAMPLE_TITLE: ENCODE biosample ENCBS567HKI
SAMPLE_SAMPLE_ATTRIBUTES_SAMPLE_ATTRIBUTE: [{"TAG": "ENCODE accession", "VALUE": "ENCBS567HKI"}, {"TAG": "sample type", "VALUE": "cell line"}, {"TAG": "cell line", "VALUE": "HCT116"}, {"TAG": "sex", "VALUE": "male"}, {"TAG": "health state", "VALUE": "colorectal carcinoma"}, {"TAG": "dev_stage", "VALUE": "adult"}, {"TAG": "age", "VALUE": "48 year"}, {"TAG": "donor ID", "VALUE": "ENCDO000ABE"}, {"TAG": "lab", "VALUE": "Erez Aiden, Baylor"}, {"TAG": "source", "VALUE": "Dr. Masato Kanemaki"}]
Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS567HKI
RUN_SET_RUN_Pool_Member_@attributes_sample_title: ENCODE biosample ENCBS567HKI
RUN_SET_RUN_SRAFiles_SRAFile: [{"Alternatives": [null, null, null], "@attributes": {"cluster": "public", "filename": "SRR25419443.lite", "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-16/SRR025/25419/SRR25419443/SRR25419443.lite.1", "size": "82085515632", "date": "2023-08-10 11:34:30", "md5": "8d6c7bde3b6e35e4385257ea00b2b800", "version": "1", "semantic_name": "SRA Lite", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "SRR25419443", "url": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR25419443/SRR25419443", "size": "185044749102", "date": "2023-08-05 09:23:54", "md5": "6d78f3f92ef880b76d356e300646b7f0", "version": "1", "semantic_name": "SRA Normalized", "supertype": "Primary ETL", "sratoolkit": "1"}}, {"Alternatives": null, "@attributes": {"cluster": "public", "filename": "ENCFF564PUN.fastq.gz", "size": "231912346312", "date": "2023-08-05 08:14:52", "md5": "f1c741e29127caa256e5baa77c41571e", "version": "1", "semantic_name": "fastq", "supertype": "Original", "sratoolkit": "0"}}]