{
  "title": "HepG2 ChromBPNet importance \u2014 counts",
  "subtitle": "ENCFF829DSC \u2022 hg38 chr4:73,380,000\u201373,480,000 \u2022 reference-base contributions only; zoom to \u2264400 bp for positive letters",
  "assembly": "hg38",
  "layout": "linear",
  "xDomain": {
    "chromosome": "chr4",
    "interval": [
      73380000,
      73480000
    ]
  },
  "tracks": [
    {
      "data": {
        "type": "csv",
        "url": "https://users.abdenlab.org/voy/HepG2_DNase_chrombpnet_counts.dynseq.tsv",
        "separator": "\t",
        "chromosomeField": "chrom",
        "genomicFields": [
          "chromStart",
          "chromEnd"
        ],
        "sampleLength": 1000000
      },
      "x": {
        "field": "chromStart",
        "type": "genomic",
        "axis": "top"
      },
      "xe": {
        "field": "chromEnd",
        "type": "genomic"
      },
      "y": {
        "field": "score",
        "type": "quantitative",
        "domain": [
          0,
          0.1408
        ],
        "axis": "right"
      },
      "color": {
        "field": "name",
        "type": "nominal",
        "domain": [
          "A",
          "C",
          "G",
          "T"
        ],
        "range": [
          "#2ca02c",
          "#1f77b4",
          "#e6a700",
          "#d62728"
        ],
        "legend": true
      },
      "width": 1100,
      "height": 160,
      "tooltip": [
        {
          "field": "chromStart",
          "type": "genomic",
          "alt": "Position (0-based)"
        },
        {
          "field": "name",
          "type": "nominal",
          "alt": "Reference base"
        },
        {
          "field": "score",
          "type": "quantitative",
          "alt": "Absolute contribution"
        },
        {
          "field": "strand",
          "type": "nominal",
          "alt": "Contribution sign"
        }
      ],
      "id": "d7a0e1c4-5f3b-4b6e-9c51-0a6f2c1d9e01",
      "title": "Positive contributions (+)",
      "dataTransform": [
        {
          "type": "filter",
          "field": "strand",
          "oneOf": [
            "+"
          ]
        }
      ],
      "alignment": "overlay",
      "tracks": [
        {
          "mark": "bar",
          "visibility": [
            {
              "target": "track",
              "measure": "zoomLevel",
              "operation": "gt",
              "threshold": 400
            }
          ]
        },
        {
          "mark": "text",
          "text": {
            "field": "name",
            "type": "nominal"
          },
          "style": {
            "textFontWeight": "bold"
          },
          "visibility": [
            {
              "target": "track",
              "measure": "zoomLevel",
              "operation": "ltet",
              "threshold": 400
            }
          ]
        }
      ]
    },
    {
      "data": {
        "type": "csv",
        "url": "https://users.abdenlab.org/voy/HepG2_DNase_chrombpnet_counts.dynseq.tsv",
        "separator": "\t",
        "chromosomeField": "chrom",
        "genomicFields": [
          "chromStart",
          "chromEnd"
        ],
        "sampleLength": 1000000
      },
      "x": {
        "field": "chromStart",
        "type": "genomic",
        "axis": "top"
      },
      "xe": {
        "field": "chromEnd",
        "type": "genomic"
      },
      "y": {
        "field": "score",
        "type": "quantitative",
        "domain": [
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        ],
        "axis": "right"
      },
      "color": {
        "field": "name",
        "type": "nominal",
        "domain": [
          "A",
          "C",
          "G",
          "T"
        ],
        "range": [
          "#2ca02c",
          "#1f77b4",
          "#e6a700",
          "#d62728"
        ],
        "legend": true
      },
      "width": 1100,
      "height": 160,
      "tooltip": [
        {
          "field": "chromStart",
          "type": "genomic",
          "alt": "Position (0-based)"
        },
        {
          "field": "name",
          "type": "nominal",
          "alt": "Reference base"
        },
        {
          "field": "score",
          "type": "quantitative",
          "alt": "Absolute contribution"
        },
        {
          "field": "strand",
          "type": "nominal",
          "alt": "Contribution sign"
        }
      ],
      "id": "d7a0e1c4-5f3b-4b6e-9c51-0a6f2c1d9e02",
      "title": "Negative contributions (\u2212; magnitude extends downward)",
      "mark": "bar",
      "flipY": true,
      "dataTransform": [
        {
          "type": "filter",
          "field": "strand",
          "oneOf": [
            "-"
          ]
        }
      ]
    }
  ]
}