{ "id": "4ba389ed-954e-4070-9fac-84bb1be0d7df", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "title": "CVH Liver Sci Use Case", "width": 1050, "layout": "linear", "tracks": [ { "id": "82f8026f-5c47-43d7-ba7e-55450280d082", "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/10/10/5308a223-8516-4e49-9eed-ef73fe2218ce/ENCFF917LFF.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#b2182b" }, "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "title": "H3K4me3-Liver-ENCFF917LFF", "height": 85 }, { "id": "63ae9927-8091-47f0-b670-926717e6aab1", "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/09/17/ce83b550-5ce6-428e-b3d1-a584ca1679b3/ENCFF764VSN.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#e08214" }, "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "title": "H3K27ac-Liver-ENCFF764VSN", "height": 85 }, { "id": "992aa36b-684b-43d7-8999-e03f35ef1bce", "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/10/30/7c96a0d3-c916-4801-b9b9-b25fd8bf862e/ENCFF042DZJ.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#c9a227" }, "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "title": "H3K4me1-Liver-ENCFF042DZJ", "height": 85 }, { "id": "1dd6ddc7-62e6-42ea-a746-613a71ad5602", "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/09/01/4c51837a-3eed-478e-9b6e-5c1186aeab7d/ENCFF005YBS.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#1b9e9e" }, "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "title": "CTCF-Liver-ENCFF005YBS", "height": 85 }, { "id": "74198601-17e6-4ac4-9fc8-aaa93809ae20", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "chromStart" }, "xe": { "type": "genomic", "field": "chromEnd" }, "data": { "url": "https://raw.githubusercontent.com/sehilyi/gemini-datasets/master/data/UCSC.HG38.Human.CytoBandIdeogram.csv", "type": "csv", "sampleLength": 10000, "genomicFields": [ "chromStart", "chromEnd" ], "chromosomeField": "Chromosome" }, "size": { "value": 18 }, "text": { "type": "nominal", "field": "Name" }, "color": { "type": "nominal", "field": "Stain", "range": [ "white", "lightgray", "gray", "gray", "black", "#7B9CC8", "#DC4542" ], "domain": [ "gneg", "gpos25", "gpos50", "gpos75", "gpos100", "gvar", "acen" ] }, "title": "Ideogram", "height": 30, "stroke": { "value": "gray" }, "alignment": "overlay", "strokeWidth": { "value": 0.3 }, "tracks": [ { "id": "bccc4ff5-77a2-4218-a5ec-f3b3ae2f1922", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "mark": "rect", "dataTransform": [ { "type": "filter", "field": "Stain", "oneOf": [ "acen" ], "not": true } ] }, { "id": "5c10626e-d546-4079-b1e4-6cfcc57a8ded", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "mark": "triangleRight", "dataTransform": [ { "type": "filter", "field": "Stain", "oneOf": [ "acen" ] }, { "type": "filter", "field": "Name", "include": "q" } ] }, { "id": "e6421629-5193-4d39-851b-a88cfa4710e5", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "mark": "triangleLeft", "dataTransform": [ { "type": "filter", "field": "Stain", "oneOf": [ "acen" ] }, { "type": "filter", "field": "Name", "include": "p" } ] }, { "id": "154c7fdc-fada-4fb1-ba4a-54833eb1043d", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "mark": "text", "size": { "value": 12 }, "color": { "type": "nominal", "field": "Stain", "range": [ "black", "black", "black", "black", "white", "black" ], "domain": [ "gneg", "gpos25", "gpos50", "gpos75", "gpos100", "gvar" ] }, "visibility": [ { "target": "mark", "measure": "width", "operation": "less-than", "threshold": "|xe-x|", "transitionPadding": 10 } ], "dataTransform": [ { "type": "filter", "field": "Stain", "oneOf": [ "acen" ], "not": true } ] } ] }, { "id": "8f88e732-3f96-44b0-b3f3-5a061addddea", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "row": { "type": "nominal", "field": "strand", "domain": [ "+", "-" ] }, "data": { "url": "https://server.gosling-lang.org/api/v1/tileset_info/?d=gene-annotation", "type": "beddb", "valueFields": [ { "name": "strand", "type": "nominal", "index": 5 }, { "name": "name", "type": "nominal", "index": 3 } ], "genomicFields": [ { "name": "start", "index": 1 }, { "name": "end", "index": 2 } ], "exonIntervalFields": [ { "name": "start", "index": 12 }, { "name": "end", "index": 13 } ] }, "color": { "type": "nominal", "field": "strand", "range": [ "#7585FF", "#FF8A85" ], "domain": [ "+", "-" ] }, "title": "Genes", "height": 100, "opacity": { "value": 0.8 }, "tooltip": [ { "alt": "Gene", "type": "nominal", "field": "name" }, { "alt": "Strand", "type": "nominal", "field": "strand" } ], "alignment": "overlay", "visibility": [ { "target": "mark", "measure": "width", "operation": "less-than", "threshold": "|xe-x|", "transitionPadding": 10 } ], "tracks": [ { "id": "a6116f7f-c405-4d00-92b6-3c8860db3134", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "end" }, "mark": "triangleRight", "size": { "value": 15 }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "gene" ] }, { "type": "filter", "field": "strand", "oneOf": [ "+" ] } ] }, { "id": "cfe34630-231d-4984-a00c-9ba5b82b5425", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "dy": -15 }, "x": { "type": "genomic", "field": "start" }, "xe": { "type": "genomic", "field": "end" }, "mark": "text", "text": { "type": "nominal", "field": "name" }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "gene" ] } ] }, { "id": "e63b4b74-9adc-4928-9936-ee582fae3ae8", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "align": "right" }, "x": { "type": "genomic", "field": "start" }, "mark": "triangleLeft", "size": { "value": 15 }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "gene" ] }, { "type": "filter", "field": "strand", "oneOf": [ "-" ] } ] }, { "id": "7251a754-8c71-4854-a7c1-370834028b4d", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "start" }, "xe": { "type": "genomic", "field": "end" }, "mark": "rect", "size": { "value": 15 }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "exon" ] } ] }, { "id": "107053ef-b3d8-4dbc-bace-6212f773f6ec", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "linePattern": { "size": 5, "type": "triangleRight" } }, "x": { "type": "genomic", "field": "start" }, "xe": { "type": "genomic", "field": "end" }, "mark": "rule", "strokeWidth": { "value": 3 }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "gene" ] }, { "type": "filter", "field": "strand", "oneOf": [ "+" ] } ] }, { "id": "15e835ec-2abe-454e-8bd0-c613e6e66cc4", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "linePattern": { "size": 5, "type": "triangleLeft" } }, "x": { "type": "genomic", "field": "start" }, "xe": { "type": "genomic", "field": "end" }, "mark": "rule", "strokeWidth": { "value": 3 }, "dataTransform": [ { "type": "filter", "field": "type", "oneOf": [ "gene" ] }, { "type": "filter", "field": "strand", "oneOf": [ "-" ] } ] } ] }, { "id": "e4ff9d6e-0333-47e7-9467-3c56cffe4039", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "inlineLegend": true }, "x": { "type": "genomic", "field": "chromStart" }, "xe": { "type": "genomic", "field": "chromEnd" }, "data": { "url": "https://pub-c19f49d19c504429973da5246c32aab7.r2.dev/GRCh38-cCREs.bed9.gz", "type": "bed", "indexUrl": "https://pub-c19f49d19c504429973da5246c32aab7.r2.dev/GRCh38-cCREs.bed9.gz.tbi", "customFields": [ "dhsId", "ccreId", "ccreClass", "displayStart", "displayEnd", "itemRgb" ], "sampleLength": 20000 }, "mark": "rect", "size": { "value": 20 }, "color": { "type": "nominal", "field": "ccreClass", "range": [ "#f2b447", "#f08033", "#d94242", "#a9a9a9", "#8b63b7", "#68a7c7", "#397b9b", "#5c9d79" ], "domain": [ "dELS", "pELS", "PLS", "CA", "CA-H3K4me3", "TF", "CA-CTCF", "CA-TF" ], "legend": true }, "title": "ENCODE cCREs", "height": 42, "stroke": { "type": "nominal", "field": "ccreClass", "range": [ "#f2b447", "#f08033", "#d94242", "#a9a9a9", "#8b63b7", "#68a7c7", "#397b9b", "#5c9d79" ], "domain": [ "dELS", "pELS", "PLS", "CA", "CA-H3K4me3", "TF", "CA-CTCF", "CA-TF" ] }, "tooltip": [ { "alt": "cCRE", "type": "nominal", "field": "ccreId" }, { "alt": "Class", "type": "nominal", "field": "ccreClass" } ], "strokeWidth": { "value": 1 } }, { "id": "b1303abe-0440-46a0-909d-16c9fcc10207", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true, "inlineLegend": true }, "data": { "url": "https://users.abdenlab.org/voy/clinvar_hg38_all.vcf.gz", "type": "vcf", "indexUrl": "https://users.abdenlab.org/voy/clinvar_hg38_all.vcf.gz.tbi", "sampleLength": 5000 }, "color": { "type": "nominal", "field": "CLNSIG", "range": [ "#D62728", "#FF7F0E", "#E7BA00", "#9467BD", "#8C8C8C", "#17BECF", "#2CA02C", "#1F77B4", "#8C564B" ], "domain": [ "Pathogenic", "Pathogenic/Likely pathogenic", "Likely pathogenic", "Conflicting classifications of pathogenicity", "Uncertain significance", "Likely benign", "Benign/Likely benign", "Benign", "other" ], "legend": true }, "title": "ClinVar clinical significance", "height": 210, "alignment": "overlay", "dataTransform": [ { "type": "filter", "field": "CLNSIG", "oneOf": [ "Pathogenic", "Pathogenic/Likely pathogenic", "Likely pathogenic", "Conflicting classifications of pathogenicity", "Uncertain significance", "Likely benign", "Benign/Likely benign", "Benign", "other" ] } ], "tracks": [ { "id": "2b164898-3c24-4284-a266-cfa133c2832a", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "POS" }, "y": { "type": "nominal", "field": "CLNSIG", "range": [ 195, 15 ], "domain": [ "Pathogenic", "Pathogenic/Likely pathogenic", "Likely pathogenic", "Conflicting classifications of pathogenicity", "Uncertain significance", "Likely benign", "Benign/Likely benign", "Benign", "other" ], "baseline": "other" }, "mark": "bar", "size": { "value": 1 }, "color": { "value": "lightgray" }, "stroke": { "value": "lightgray" }, "opacity": { "value": 0.3 }, "strokeWidth": { "value": 1 } }, { "id": "fdc0d922-4aea-48a6-b399-ba9c88bac0f6", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "POS" }, "y": { "type": "nominal", "field": "CLNSIG", "range": [ 195, 15 ], "domain": [ "Pathogenic", "Pathogenic/Likely pathogenic", "Likely pathogenic", "Conflicting classifications of pathogenicity", "Uncertain significance", "Likely benign", "Benign/Likely benign", "Benign", "other" ], "axis": "right" }, "mark": "point", "size": { "value": 7 }, "opacity": { "value": 0.8 }, "tooltip": [ { "alt": "Gene", "type": "nominal", "field": "GENE" }, { "alt": "Clinical significance", "type": "nominal", "field": "CLNSIG" }, { "alt": "Variant", "type": "nominal", "field": "VARIANTNAME" }, { "alt": "Molecular consequence", "type": "nominal", "field": "CONSQNAME" }, { "alt": "Phenotype", "type": "nominal", "field": "PHENOTYPES" }, { "alt": "Review status", "type": "nominal", "field": "REVIEWSTATUS" } ] } ] }, { "data": { "type": "bed", "url": "https://users.abdenlab.org/voy/dynseq/ENCFF564PMV.hg38.dynseq.bgz", "indexUrl": "https://users.abdenlab.org/voy/dynseq/ENCFF564PMV.hg38.dynseq.bgz.tbi", "sampleLength": 1000000 }, "x": { "field": "chromStart", "type": "genomic", "axis": "top" }, "xe": { "field": "chromEnd", "type": "genomic" }, "y": { "field": "signedScore", "type": "quantitative", "domain": [ -0.0818, 0.0818 ], "axis": "right", "zeroBaseline": false }, "color": { "field": "name", "type": "nominal", "domain": [ "A", "C", "G", "T" ], "range": [ "#2ca02c", "#1f77b4", "#e6a700", "#d62728" ], "legend": true }, "height": 300, "tooltip": [ { "field": "chromStart", "type": "genomic", "alt": "Position (0-based)" }, { "field": "name", "type": "nominal", "alt": "Reference base" }, { "field": "signedScore", "type": "quantitative", "alt": "Signed contribution" } ], "id": "d7a0e1c4-5f3b-4b6e-9c51-0a6f2c1d9e11", "title": "HepG2 ATAC ChromBPNet profile signed importance (+/\u2212) \u2014 ENCFF564PMV", "dataTransform": [ { "type": "genomicLength", "startField": "chromStart", "endField": "chromEnd", "newField": "unit" }, { "type": "log", "field": "unit", "newField": "zero" }, { "type": "replace", "field": "strand", "newField": "signPrefix", "replace": [ { "from": "-1", "to": "-" }, { "from": "1", "to": "" } ] }, { "type": "concat", "fields": [ "signPrefix", "score" ], "separator": "", "newField": "signedScore" } ], "alignment": "overlay", "tracks": [ { "id": "a90cca66-a459-513f-8ec9-69ce62a9b8b4", "mark": "bar" }, { "id": "155e8cbd-7703-5351-ae66-28f86d3bd61e", "mark": "text", "dataTransform": [ { "type": "filter", "field": "strand", "oneOf": [ 1 ] } ], "text": { "field": "name", "type": "nominal" }, "size": { "value": 12 }, "style": { "textFontWeight": "bold", "dy": 8 }, "visibility": [ { "target": "track", "measure": "zoomLevel", "operation": "ltet", "threshold": 150 } ] }, { "id": "2920a6fc-b078-55df-8cf9-c1dd64b72467", "mark": "text", "dataTransform": [ { "type": "filter", "field": "strand", "oneOf": [ -1 ] } ], "text": { "field": "name", "type": "nominal" }, "size": { "value": 12 }, "style": { "textFontWeight": "bold", "dy": -8 }, "visibility": [ { "target": "track", "measure": "zoomLevel", "operation": "ltet", "threshold": 150 } ] }, { "id": "679edf4b-c5f4-560a-92b3-ac2b89cd2748", "mark": "rule", "y": { "field": "zero", "type": "quantitative", "domain": [ -0.0818, 0.0818 ], "zeroBaseline": false, "axis": "none" }, "color": { "value": "#777777" }, "strokeWidth": { "value": 0.6 } } ], "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "ye": { "field": "zero", "type": "quantitative" } }, { "data": { "type": "bed", "url": "https://users.abdenlab.org/voy/dynseq/ENCFF183YWR.hg38.dynseq.bgz", "indexUrl": "https://users.abdenlab.org/voy/dynseq/ENCFF183YWR.hg38.dynseq.bgz.tbi", "sampleLength": 1000000 }, "x": { "field": "chromStart", "type": "genomic", "axis": "top" }, "xe": { "field": "chromEnd", "type": "genomic" }, "y": { "field": "signedScore", "type": "quantitative", "domain": [ -0.0956, 0.0956 ], "axis": "right", "zeroBaseline": false }, "color": { "field": "name", "type": "nominal", "domain": [ "A", "C", "G", "T" ], "range": [ "#2ca02c", "#1f77b4", "#e6a700", "#d62728" ], "legend": true }, "height": 300, "tooltip": [ { "field": "chromStart", "type": "genomic", "alt": "Position (0-based)" }, { "field": "name", "type": "nominal", "alt": "Reference base" }, { "field": "signedScore", "type": "quantitative", "alt": "Signed contribution" } ], "id": "d7a0e1c4-5f3b-4b6e-9c51-0a6f2c1d9e13", "title": "Liver right lobe ATAC ChromBPNet profile signed importance (+/\u2212) \u2014 ENCFF183YWR", "dataTransform": [ { "type": "genomicLength", "startField": "chromStart", "endField": "chromEnd", "newField": "unit" }, { "type": "log", "field": "unit", "newField": "zero" }, { "type": "replace", "field": "strand", "newField": "signPrefix", "replace": [ { "from": "-1", "to": "-" }, { "from": "1", "to": "" } ] }, { "type": "concat", "fields": [ "signPrefix", "score" ], "separator": "", "newField": "signedScore" } ], "alignment": "overlay", "tracks": [ { "id": "51b1dc17-0168-522c-baa6-c81ce94d9109", "mark": "bar" }, { "id": "c5631389-37c6-58b1-9c10-22113ed0903d", "mark": "text", "dataTransform": [ { "type": "filter", "field": "strand", "oneOf": [ 1 ] } ], "text": { "field": "name", "type": "nominal" }, "size": { "value": 12 }, "style": { "textFontWeight": "bold", "dy": 8 }, "visibility": [ { "target": "track", "measure": "zoomLevel", "operation": "ltet", "threshold": 150 } ] }, { "id": "f57383f6-d08e-52ac-8a54-43c7950c18ab", "mark": "text", "dataTransform": [ { "type": "filter", "field": "strand", "oneOf": [ -1 ] } ], "text": { "field": "name", "type": "nominal" }, "size": { "value": 12 }, "style": { "textFontWeight": "bold", "dy": -8 }, "visibility": [ { "target": "track", "measure": "zoomLevel", "operation": "ltet", "threshold": 150 } ] }, { "id": "7bf3bf4b-5e32-5495-80ed-02c39108a7eb", "mark": "rule", "y": { "field": "zero", "type": "quantitative", "domain": [ -0.0956, 0.0956 ], "zeroBaseline": false, "axis": "none" }, "color": { "value": "#777777" }, "strokeWidth": { "value": 0.6 } } ], "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "ye": { "field": "zero", "type": "quantitative" } }, { "id": "52b6a0aa-532d-4974-8b2f-3bcaaa60a809", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/12/08/f32057b8-e426-487e-966d-9b065fa5826c/ENCFF920KHC.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#3578b0" }, "title": "HNF4A-Liver-Donor-ENCFF920KHC", "height": 85 }, { "id": "0dc075ef-0243-4b28-bbc5-ef7ad03b59e3", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/12/09/6880bd1c-2c49-407c-99d7-a5ce622127cc/ENCFF132KFG.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#d78336" }, "title": "FOXA2-Liver-Donor-ENCFF132KFG", "height": 85 }, { "id": "9997e0e6-9d42-47c3-a6cb-02b7276f1c40", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/12/08/d92f0c4a-7a96-451f-8579-18d99201faaa/ENCFF859ZKV.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#7455a5" }, "title": "RXRA-Liver-Donor-ENCFF859ZKV", "height": 85 }, { "id": "3127b869-0ed3-42ed-ae4e-fed179964122", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/12/08/5ef188c5-d6f2-41b9-870d-34769ad36e01/ENCFF320GQX.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#42966c" }, "title": "SP1-Liver-Donor-ENCFF320GQX", "height": 85 }, { "id": "68e1ff88-a737-4348-8884-e1fc9725dde1", "style": { "outline": "#C7C7C7", "outlineWidth": 1, "enableSmoothPath": true }, "x": { "type": "genomic", "field": "position" }, "y": { "axis": "right", "type": "quantitative", "field": "value" }, "data": { "url": "https://encode-public.s3.amazonaws.com/2020/12/08/1830ee19-0ddd-4d1d-93fe-e655f3508c86/ENCFF764XDE.bigWig", "type": "bigwig", "value": "value", "column": "position" }, "mark": "bar", "color": { "value": "#c65364" }, "title": "HepG2-Tbx3-ENCFF764XDE", "height": 85 } ], "spacing": 8, "xDomain": { "interval": [ 73380000, 73480000 ], "chromosome": "chr4" }, "assembly": "hg38" }