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2086f369084ab539257b827b6aae5901e2958d5ac1b96d6ef681d168017e594e  ./LY_Chip-seq/results/multiqc/narrow_peak/multiqc_data/fastqc_per_base_n_content_plot-1.yaml
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3d1c69859804ab5bcdbfea729367b8af34a67669f55fd576277e87e60ee07baf  ./LY_Chip-seq/results/multiqc/narrow_peak/multiqc_data/samtools-idxstats-xy-plot-1.yaml
4c7a3debdcf69eb07097982c2e02baf1f3604bcdcab7ed6883b755856d22a573  ./LY_Chip-seq/results/multiqc/narrow_peak/multiqc_data/fastqc_adapter_content_plot.yaml
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2c67cc37cf568ad48a4be2e46e83153cb89352fc215e8daa3b87be98169da816  ./LY_Chip-seq/results/multiqc/narrow_peak/multiqc_data/fastqc_per_sequence_gc_content_plot-1_Percentages.yaml
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5bda885218db2c03d3d06209bc371f790f1cf326d5801d47003482b30b96ca05  ./LY_Chip-seq/results/igv/narrow_peak/igv_files.txt
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7bc77976cca55fa92ce47b53072679a36b1a465f14def46378552157f9f82ed5  ./JHG_RNA-seq/DE-3C_S14_L001_R2_001.fastq.gz
ba7c3ef0d6e0a3a65fdd2cd4b4c306a98dde33580a2af9c2a21d7dc54d6acdb8  ./JHG_RNA-seq/20250717_RNA.csv
d264f6a3cf791acfc5d040481960c0a838b414d9838ec87346d0d58eb0c4d8a6  ./JHG_RNA-seq/DE-3C_S14_L001_R1_001.fastq.gz
d8c66b22f82a718358eb420248ba0e7ae3cef679c1e66514675d38bf08e3d756  ./JHG_RNA-seq/trimgalore/DE-7_trimmed_2.fastq.gz_trimming_report.txt
70f1911b8940cf6af4e347c2314fbaec974ff622bc4b6834a0b8bae657394c28  ./JHG_RNA-seq/trimgalore/DE-6_trimmed_1.fastq.gz_trimming_report.txt
e2c1d34bef68f4517bab8561fc3815973f803028dc66fea76ad990bf0a4665e5  ./JHG_RNA-seq/trimgalore/DE-2_trimmed_1.fastq.gz_trimming_report.txt
6d7dc96c5681bd8dcd85299d5a1d2f51377e80e4d12306dceedc1611520bcc8a  ./JHG_RNA-seq/trimgalore/HB_trimmed_1.fastq.gz_trimming_report.txt
36cb9eaab99b741cea479fcaf6940e1247270691e6c628e584bf942edfd959aa  ./JHG_RNA-seq/trimgalore/DE-3_trimmed_2.fastq.gz_trimming_report.txt
dd88063a93559467dc4f177b114a30065b1ef846a3605f61430e0a2a48c3c93d  ./JHG_RNA-seq/trimgalore/DE-3_trimmed_1.fastq.gz_trimming_report.txt
ed6d974fb7466447941afd2836e88c585e07e5b40880f260c33534e02674e0b6  ./JHG_RNA-seq/trimgalore/DE-2_trimmed_2.fastq.gz_trimming_report.txt
0a46fb05b1e39252f0ba302a5fd7daf026c57a26d32d865fd2ab3461bd1c12c4  ./JHG_RNA-seq/trimgalore/HB_trimmed_2.fastq.gz_trimming_report.txt
8ed39a0d51f24c12d8f5ab011775f042714c139a43954f84c177fa6561a5ba10  ./JHG_RNA-seq/trimgalore/DE-6_trimmed_2.fastq.gz_trimming_report.txt
d0946bbfd32622dd163e03f8c2bb980da979fe9a316c9f648780f076fbdf800f  ./JHG_RNA-seq/trimgalore/DE-7_trimmed_1.fastq.gz_trimming_report.txt
e9a3de0a20e0382c0796bcbd8edb9a02a4a8243263dd2fdd1024aadf7062d9ac  ./JHG_RNA-seq/trimgalore/DE-1_trimmed_1.fastq.gz_trimming_report.txt
c62059a9a12957f160636dacfc49e009aec736f17b033ea8acdbeb7f1e45d6f9  ./JHG_RNA-seq/trimgalore/DE-3C_trimmed_2.fastq.gz_trimming_report.txt
db86da167ef59ae542a2b558ac1b91bb0c3aad1e98c97a1dc9a007259a832dab  ./JHG_RNA-seq/trimgalore/DE-5_trimmed_1.fastq.gz_trimming_report.txt
f9a3943c2aa2ee1b3e5aa50c4aa04c7cdfd61b4e2e34d148393a98536c90ed00  ./JHG_RNA-seq/trimgalore/DE-4_trimmed_2.fastq.gz_trimming_report.txt
7ec170dc454249c7d746df8ef038215d7d45f6f5fea1d236c8b4f2cefbc0ca95  ./JHG_RNA-seq/trimgalore/DE-4_trimmed_1.fastq.gz_trimming_report.txt
76b4b64fc3004daa1a18d15fd29486202eb0dea390196fb3aa38c2b0efcc7d31  ./JHG_RNA-seq/trimgalore/DE-5_trimmed_2.fastq.gz_trimming_report.txt
e4648bd8213d8f779ce0a4c0d6783561da2059a0b857f99dfedf153205af4530  ./JHG_RNA-seq/trimgalore/DE-3C_trimmed_1.fastq.gz_trimming_report.txt
e511a3c00763efe24ab16a756f49487871de3604cd8f95a10286105e3063384b  ./JHG_RNA-seq/trimgalore/DE-1_trimmed_2.fastq.gz_trimming_report.txt
4f31cd7015cd14e5f1b7da9103469fe722ae234e09c607c5788a6d6ac523e1cc  ./JHG_RNA-seq/DE-2_S12_L001_R2_001.fastq.gz
70038366e9271d2ae593c5b83f86db3765c665d02c3e9746c605ae5e186b3322  ./JHG_RNA-seq/fq_lint/raw/DE-2.fq_lint.txt
e765f4838d8b4d9dccb5ddf7c37f854f0c15dc9fb7aa1b061a1dfcf5dc79bc13  ./JHG_RNA-seq/fq_lint/raw/DE-4.fq_lint.txt
05e8b548f9e53e37a890c99cc51a60599e864dfee9c611e8fbff16c37e058fa4  ./JHG_RNA-seq/fq_lint/raw/DE-6.fq_lint.txt
da2119d124c4a6fd18b048bba33789d6247c8b129d95767bea70be6390c8a133  ./JHG_RNA-seq/fq_lint/raw/DE-5.fq_lint.txt
d3963c39cb5f332baceb3fc2072b120bcada33b411303643b44b54dcd98f3c03  ./JHG_RNA-seq/fq_lint/raw/HB.fq_lint.txt
515453ba5f7e8d919c0fd0a986d740a1d40d004c48c607b0999663ebde3b2c65  ./JHG_RNA-seq/fq_lint/raw/DE-3C.fq_lint.txt
73823e2bad63334540c28083131b62ba6359ec261824df74e03783d2ad16ebb6  ./JHG_RNA-seq/fq_lint/raw/DE-7.fq_lint.txt
171511697efaa1609981dcf1be756487bc8c35d1e5afc83d1f97e02c654d8024  ./JHG_RNA-seq/fq_lint/raw/DE-1.fq_lint.txt
079b3f37a3ac6721f95ecf9414160d2233856dc0523da45337aa4f2a41084f6a  ./JHG_RNA-seq/fq_lint/raw/DE-3.fq_lint.txt
1039effb3c4fded4a0d104599f77fbd567369f844e29030f2314a1afb5b64331  ./JHG_RNA-seq/fq_lint/trimmed/DE-3.fq_lint.txt
0426c61febfaed573594febc28fe355e0a2217ad2c6ade231a10aedab17b44d9  ./JHG_RNA-seq/fq_lint/trimmed/DE-3C.fq_lint.txt
128a83a907e1dfdd5c42f4e72960e28e9c0f2ac0e1d0a2e54a3e28feb46afabf  ./JHG_RNA-seq/fq_lint/trimmed/DE-1.fq_lint.txt
096a1ae2dfd0a27203f87bb5519540a95cb93c477280baefd4d473ea23da7502  ./JHG_RNA-seq/fq_lint/trimmed/HB.fq_lint.txt
925378dc3f6a8bc526450cb78cf4d400f87c3549e32615a5c4d2988a54c353a9  ./JHG_RNA-seq/fq_lint/trimmed/DE-7.fq_lint.txt
da423dede5cabe497fe14a919d60cb23daf5c4dbd2b2a305fba7d8f3d9fdefc4  ./JHG_RNA-seq/fq_lint/trimmed/DE-5.fq_lint.txt
c46353f7b838b97c313b3393523598ff2004fd550fb681c33882342b790682d4  ./JHG_RNA-seq/fq_lint/trimmed/DE-6.fq_lint.txt
f90e76c0669c7c9579650b89e5c9eb17bd67b053589e2567ef326915eb3870ab  ./JHG_RNA-seq/fq_lint/trimmed/DE-4.fq_lint.txt
0d64c9e6669f5190d705fa67bb5c4dd662acde5525e7ef2252aaf4a7871d2f04  ./JHG_RNA-seq/fq_lint/trimmed/DE-2.fq_lint.txt
9a051fdba9ab1fb53636676f60a94cab82ce2aaa9ceef1ceccaf779cb10fdc58  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-3.markdup.sorted.MarkDuplicates.metrics.txt
f463ce80878de218dccb9f89001a736d5ee7632cd3f34774b14a8078849e88e9  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-4.markdup.sorted.MarkDuplicates.metrics.txt
dda919a226e4ebad9edf48d4ab39feb90ef58049bcbf19374c856fb9f2c0f78f  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-2.markdup.sorted.MarkDuplicates.metrics.txt
960bb72cb63c26783ec2e3004283025ce019540e0ba0d43792f6dae4cd60d6c0  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-5.markdup.sorted.MarkDuplicates.metrics.txt
56cb51770d0b239a49366caff32316eb7547067b87a4992e5b7f4c9fcccc47a1  ./JHG_RNA-seq/star_salmon/picard_metrics/HB.markdup.sorted.MarkDuplicates.metrics.txt
3ba73dffada9cefb48df4d5460d703a91d518e25bd241b5f2580972447e71ad3  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-6.markdup.sorted.MarkDuplicates.metrics.txt
61a93d8b7bd80bd4d3c7b2c121c54a45c2faea9e840380ba12bf92455156fd03  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-1.markdup.sorted.MarkDuplicates.metrics.txt
aaf383cd20568fec1388ebd55d4d9c7458946521a1f6090d35db5e93fe3c17ce  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-7.markdup.sorted.MarkDuplicates.metrics.txt
e8eac64c1bec62240cd723ebf455eea142e015a8bf001cf104fd2135880f929f  ./JHG_RNA-seq/star_salmon/picard_metrics/DE-3C.markdup.sorted.MarkDuplicates.metrics.txt
13b47ac9c9c4662093798ed867f88c70e9f650ecb9128a180672ef14d0195abf  ./JHG_RNA-seq/star_salmon/DE-3C/cmd_info.json
ba7839993bb7f08862245afc6036e882fef4bdca3fa2352c0d5a295313cba29f  ./JHG_RNA-seq/star_salmon/DE-3C/quant.genes.sf
625d351d3c3f672bde6e67dca56951e7f08b27ea9c11d10fdeb04d474bbcddfc  ./JHG_RNA-seq/star_salmon/DE-3C/quant.sf
18adb8005bd4051eb44d645b62616b0697c14ea9ebcdb2c66e52d18d279d6d36  ./JHG_RNA-seq/star_salmon/DE-3C/libParams/flenDist.txt
53dadb1c124a4a223dbcb21c3132d9d428cddf213776214673933068bf71be4a  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/ambig_info.tsv
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/expected_bias.gz
e66a439f8e8aacf43666d523290b0ec1f59376882182e5964873536889183420  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/meta_info.json
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/observed_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/observed_bias_3p.gz
25915b264d7bddca3883e492e76911526014896eecc438f9fa7fdb20a92f9ded  ./JHG_RNA-seq/star_salmon/DE-3C/aux_info/fld.gz
e30338cffe3d966faf182f67fa8f0eef05dc03faa29eaf05f87cfa13e14ad6ab  ./JHG_RNA-seq/star_salmon/DE-3C/logs/salmon_quant.log
c3384b7c4f14049d67d900675e242a28459e11ffee3cbce55d8bbb070a3e0a4e  ./JHG_RNA-seq/star_salmon/DE-1/logs/salmon_quant.log
3ec75e7887d01d41ad1b0483c4b3b9f1eca97fc6d380f2e5f0ac12079f20c705  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/fld.gz
983cf6f21b70eb8ddf2b4c03529d1fe4084c6d55c80480ed977fc3cec4e7d9e2  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/ambig_info.tsv
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/expected_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/observed_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/observed_bias_3p.gz
2bfe0ccf9e4706f75cf9f80f19ca4be58f03c05ed9264120d1627d8ab718f0c3  ./JHG_RNA-seq/star_salmon/DE-1/aux_info/meta_info.json
2fe3428310a9fea2e52e3739aca9065db8dbe1965f2a6c13a6aa0d0b6767a9b7  ./JHG_RNA-seq/star_salmon/DE-1/quant.genes.sf
2ce5872b36ac77d67a46eb24365bdeab454f86dd337bddfa4d5a946e2628ffee  ./JHG_RNA-seq/star_salmon/DE-1/cmd_info.json
6e2843aa30e6e20a994c9b4daf013774a60aee2b96d5ea18893b56ec607a5a0a  ./JHG_RNA-seq/star_salmon/DE-1/quant.sf
8e8306c0203458f3a5fa449d290d91ab16b6605e0e99095c0c3bc4551e22e759  ./JHG_RNA-seq/star_salmon/DE-1/libParams/flenDist.txt
87dadddc8ea57ecf2b7f406a10a0d23308628ebc58ea02d6727e3c6d67aa3bb7  ./JHG_RNA-seq/star_salmon/DE-6/logs/salmon_quant.log
d485fe34c92949d163feed0f45e65be04b98ffe4ebc5bbb4b6ea14ed87e314e6  ./JHG_RNA-seq/star_salmon/DE-6/libParams/flenDist.txt
df7e007ea4ab8ef2b1c8b351b301b9c18e6bcc7c041a00ad222a13d510f0f236  ./JHG_RNA-seq/star_salmon/DE-6/quant.genes.sf
424a85d4fe6a9f147c522fcd165112a28ab678ebeba8bfab9465d72778f94a5e  ./JHG_RNA-seq/star_salmon/DE-6/quant.sf
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/observed_bias_3p.gz
f4d80dc8a6239bf9e0e665bde49aee7cd6155b7c65b9651eca2bf72b82b11123  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/ambig_info.tsv
9f76d6c2095866d07eb87c805b723d6bf4079b79322b364031b9f3f2b4d2c600  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/fld.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/observed_bias.gz
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/expected_bias.gz
43c5e3e9c33372fcc11fb5cee93e452e24cd9d9de54caeba46189a3a823051ab  ./JHG_RNA-seq/star_salmon/DE-6/aux_info/meta_info.json
49f861d6631adf2786e866e04b42dba706ec2de560417dc94ac93d34f07c207e  ./JHG_RNA-seq/star_salmon/DE-6/cmd_info.json
bc6536c452ada912bce0b222617ca76d0cae319f36d8b58578944c0e1fe19263  ./JHG_RNA-seq/star_salmon/salmon.merged.transcript_counts.tsv
785dfe19a5ce012b769ab4f63c6407ddde2048689d73f272612e7e45330a7f46  ./JHG_RNA-seq/star_salmon/salmon.merged.gene_counts_length_scaled.tsv
01cd0143bbc37ceebcce9d4adc76b50e5b6a30ba1c4f69bdcd77d1fe8b82d5d0  ./JHG_RNA-seq/star_salmon/salmon.merged.gene_counts.tsv
fb6b0e3ccaeef130432dddf8993509effbcbb114ad85513668c15bdd18404468  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.sorted.bam.flagstat
faf117fe475da270a263e0e34b7be66183916d992536e640f52f75b8179bfec8  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.sorted.bam.flagstat
8665e2f334544f2d0d05df479e7f2f9c2d6a9e70561fe1d74e63571d2a7a1aba  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.markdup.sorted.bam.flagstat
15f16a06d913c16ba5bafea8d81d69968c870b8376ba23e1b1918cc8eaeb56fe  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.markdup.sorted.bam.flagstat
75272e3cc6920f34472c27dddcd96edf3d2e827b9a97c2d5f0e438feb2a4d3d1  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.markdup.sorted.bam.idxstats
ff4880d025a4377092157d689c52b9a94efdd85bcaccf7a08c48ea294d72bae7  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.markdup.sorted.bam.idxstats
2de4762638340d654d58508a99b0ea30ebc93546412af00590766b5bf2cc6d7e  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.sorted.bam.idxstats
300ce6b3a248a6edb078a2ae190f2ca5601d5b7495b6bb801114e00b7c8955a2  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.sorted.bam.idxstats
d587fff18a16cf80be7a9b5c63f64ae4cc90120b803f679a30d11ce1cbe691ec  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.markdup.sorted.bam.flagstat
05dca89dfccf3268cbdaba191e6d4a24f84af3ec120946916640659b116367ad  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.markdup.sorted.bam.flagstat
ca460691c8748df3e34944253bf5b25d619b6d043def8d49eff100a79d31601d  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.markdup.sorted.bam.flagstat
651bf43c4954f5d2bfe3afd710b22a2c853cdfac96eddaa2b352a866976694d9  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.sorted.bam.flagstat
ff4880d025a4377092157d689c52b9a94efdd85bcaccf7a08c48ea294d72bae7  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.sorted.bam.idxstats
2175838fc8b063567383af9e7653e2c1d7561a083eeee3d16c4cfc3a4b9282e1  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.sorted.bam.flagstat
99553f2b813254d102bf8f0cebd2d45780f42057f7dc05ffec9615de94576d09  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.sorted.bam.stats
f8285ec72ecaaf3fd5098f555f736c7341bcaf4bf69a87c79fd466ed47661b52  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.sorted.bam.idxstats
25dddd96c0e25bacbd7f0f63b505ad647c1fe5d160e946cb2ba3a77ba441e066  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.sorted.bam.flagstat
b382bab5b0142f728bd954f6d9bd446face8a23d2782d8619d17164691165dfc  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.sorted.bam.idxstats
f8285ec72ecaaf3fd5098f555f736c7341bcaf4bf69a87c79fd466ed47661b52  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.markdup.sorted.bam.idxstats
2de4762638340d654d58508a99b0ea30ebc93546412af00590766b5bf2cc6d7e  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.markdup.sorted.bam.idxstats
bf8917467e4bf96fb0301ec5cbfc27dd80b151a94d28bec142591e68ff030da6  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.markdup.sorted.bam.idxstats
8c047c9041b8c950b3c606bd8b5da8483a15e271742f1f081e0835db403f0842  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.markdup.sorted.bam.flagstat
68cc992abf113126e894c5646411956a75718db7783f204ef3df74a53c10cefc  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.markdup.sorted.bam.flagstat
cb287da6cf0ec386542c6fb2fb1f039df2216e1c0e6b75d61630ba4214e8054f  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.markdup.sorted.bam.stats
5dcffc5fcb536a5930c63b50c56ee4a638cf05ebc67d59854f0bd04a1ae5ef7a  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.markdup.sorted.bam.flagstat
bf2512f3168d85235d72420f1ca83e909606ca4427a30ff2bf1a154215677d11  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.sorted.bam.stats
577ff5e1a0814fd135e1c257e5cb3f2daba6662b7b814ce2e394d0a327a88f71  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-2.markdup.sorted.bam.stats
0f6142f7928c2eb9c3c4fab2d0cd970fc58eecdca84537ad0b13b3f727e2f5f0  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.markdup.sorted.bam.flagstat
ee1aca0dfbe4ba2641c3c4cda62bbe61258074ecec0e75dd79c8e5335c420426  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.sorted.bam.idxstats
3b069eecebc14ea03b1364891feea8f71e2d64e808a995ee4b72c832b93c5862  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.sorted.bam.flagstat
ee52f28d6c043f429a0e8a23024ea75c34f00059a2340320e4b6de7385c9e066  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.sorted.bam.stats
19304b8039284f21b667becd5c2cd6d7033fe9de039ba634e93d0fa0ad00512f  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.markdup.sorted.bam.stats
79144a9c29c6413162b2a690e3853c0af2caedfd1bcf2084478cda5cd48baa20  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.markdup.sorted.bam.stats
913ed33ab1b2979d2da102730b96aa9e8bce14c06cdfa354eeb6bd168a342faa  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.markdup.sorted.bam.stats
75272e3cc6920f34472c27dddcd96edf3d2e827b9a97c2d5f0e438feb2a4d3d1  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3C.sorted.bam.idxstats
9a0da617a539879872d7a907baa6459ac3c0a4b5a748f2b6b6802684a1ae07fd  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.markdup.sorted.bam.stats
ee1aca0dfbe4ba2641c3c4cda62bbe61258074ecec0e75dd79c8e5335c420426  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.markdup.sorted.bam.idxstats
c10a293a3097ee8a9ef04ec3a8ecc53f61a5decf188d085ab8bb934eceec8501  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.sorted.bam.stats
b382bab5b0142f728bd954f6d9bd446face8a23d2782d8619d17164691165dfc  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.markdup.sorted.bam.idxstats
0e1a6d5d1f473f76721803c72229823fd723dcc2c1a29224084992f3be6c843d  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.markdup.sorted.bam.stats
173029e1365080d8964b5d85a467dc1b4020ad9a817b45d3a7a77f316139532e  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.markdup.sorted.bam.idxstats
91022b02422eed2116b26a9478fc79681f393b194017be5832db6310cff6a73b  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.markdup.sorted.bam.stats
ce4568a21c0160f20cd7a01ddaef324f416fec7d04985f76724d9b5733d22da1  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.sorted.bam.flagstat
300ce6b3a248a6edb078a2ae190f2ca5601d5b7495b6bb801114e00b7c8955a2  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-1.markdup.sorted.bam.idxstats
a480315dfb96d6117ea97826053644623f542f282e53d1d46bdcb80ae50edff0  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-7.sorted.bam.stats
bf8917467e4bf96fb0301ec5cbfc27dd80b151a94d28bec142591e68ff030da6  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.sorted.bam.idxstats
234dd0c63e5d3474402f28c441eab8bd1ede755bf99a06339889786d170b621f  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.markdup.sorted.bam.stats
173029e1365080d8964b5d85a467dc1b4020ad9a817b45d3a7a77f316139532e  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.sorted.bam.idxstats
11fa5dc33c39397fb048ddd6bec8697bf38d3f5b46507999f01024ca7106634b  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-6.sorted.bam.stats
9bab847def8fd45a85c12fe9dedc16bde67e41cabe627fce3abd6bcc2c0ab6a6  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-5.sorted.bam.stats
3e695d6140e2f0fef37336e2c6a5cc49942ff068822a41685fa3466b552a099b  ./JHG_RNA-seq/star_salmon/samtools_stats/HB.sorted.bam.stats
75d8dee64f47367c9190ee96829483181e029b7573df245b472c7f1f25e4372c  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.sorted.bam.flagstat
f73ed87f6aa18856d5ec4be55668a06b94826b827fe91b1769fb07befa9743be  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-3.sorted.bam.flagstat
bc5aee0cb59cbad6809848a117f21b9adbc56f1cc23052c7d956605371c79f53  ./JHG_RNA-seq/star_salmon/samtools_stats/DE-4.sorted.bam.stats
14b303f29c044166506bb3ab28e58cf4c2db7af3dce64cccbb1f7c79b0d5278d  ./JHG_RNA-seq/star_salmon/DE-2/logs/salmon_quant.log
f296bb09dc0fa2028a056fa8cd83d89f3042ae12faa3c40bfe1981c1dc248291  ./JHG_RNA-seq/star_salmon/DE-2/quant.sf
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54b0d283ed33b2820ebfcab176cd16da1ac4223d8e1b1a81b9939a3a5f6e6ce5  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/fld.gz
c851be1cf2e3ee85b181a02af3227fa340e60ec31acb7dee37828b194cf97445  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/ambig_info.tsv
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/observed_bias_3p.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/observed_bias.gz
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/expected_bias.gz
b7047fb54bee8d28c48cf93c633e6afb121ad61528fc358ab30079085d72e9d9  ./JHG_RNA-seq/star_salmon/DE-2/aux_info/meta_info.json
47a4cc1f1393537d9f0f6d47cbf7d0174929ef0d3eb5cccb127bee15ba81f444  ./JHG_RNA-seq/star_salmon/DE-2/quant.genes.sf
5494572a0098dd24c5fda776be03653af28f7a3d4d38654429de1c5ddc7ea01b  ./JHG_RNA-seq/star_salmon/salmon.merged.transcript_lengths.tsv
a8df68e3b93d9351116b3a0c69acd0b01bc37456e23c46939c3bc964814891a1  ./JHG_RNA-seq/star_salmon/DE-5/quant.sf
189d0b75aa24c17848c78d28021b121499cf918bff45eb0d44e4b83e59610563  ./JHG_RNA-seq/star_salmon/DE-5/cmd_info.json
4b52c09fe33e6c775bf54a5f3f266be106af039a77fad66d2a7f6d134ec526fd  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/meta_info.json
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/expected_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/observed_bias.gz
e136f847c5ec2d07ba60d8e98ec7f8a924bad8e11efdd48a19aad07ebeda81f7  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/ambig_info.tsv
2bea5ade69f6fd59e9411f8dd0bbccf4dc47a9005f0d9720d31be7f40cf9aa3f  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/fld.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-5/aux_info/observed_bias_3p.gz
5a714548f6f2e2883d58e0ec56c2036f6b83d7d37389fd624ad89b5ba366604e  ./JHG_RNA-seq/star_salmon/DE-5/logs/salmon_quant.log
501e40ce32011a1109d443afb04358a0ed939f34e9c2a6b57323432db7321163  ./JHG_RNA-seq/star_salmon/DE-5/libParams/flenDist.txt
bf71a1d71d7cddec04ffb1fe79c5af8a98bfa5f25801645c133fdf430db57675  ./JHG_RNA-seq/star_salmon/DE-5/quant.genes.sf
422cde16b5415009bc80b7fcb016ca8f1fe12a9cf1eda3b860e958b545f170f3  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-5_dupMatrix.txt
1ce7fc81b2ab5f87284be492a19993b692318ec0dfaceb4b5fa9757063fa2b8a  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-2_dupMatrix.txt
ab5d1861a4cf1d47a981423f8eef5907e8c63c2e05f737c0ec339756e01dee29  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-7_dupMatrix.txt
70cdcb5e251005138a9642f5585466ded56bfb46ff31e939e4060d1f6247ae74  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-6_dupMatrix.txt
4fc96021d5fd4706ad0d1ab8063c263dedbf9ea86a287628466a2791dbe84009  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-3_dupMatrix.txt
1bc71f2ef920e312849525c0c879b06f8501dc0bee75a263a9e0e27f6f75d143  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-3C_dupMatrix.txt
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1a471747c42cbcf5e57e0687a4db87beaa5c3e13a6327066ba7b3c7df9ab71c8  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/HB_dupMatrix.txt
b1d76310a4660a54e91d72e7b58b3c199f3754398bebdebf35eac5eb4cf85dfc  ./JHG_RNA-seq/star_salmon/dupradar/gene_data/DE-4_dupMatrix.txt
a5f148127940a6418bb82ee153ae4ea02238bec6e29e4764ddf4fe1f4a6905a0  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-1_expressionHist.pdf
d7eed253a53b3cdfd512f0e59c4b601d37912df0ae7d5f88a49cd75942da263d  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-6_expressionHist.pdf
e309cdbc83c80982cc6ec3e12631cc4b6c8b113705a197ea16716280030669f5  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-3_expressionHist.pdf
b9fb7f452053e5b7189e5251f8099085c123cc85dfd0ca1c1b349c6fc598528c  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-4_expressionHist.pdf
45a52ed6cc048e47b9d524ff76a647f0d1ab510c366011476787b948d7d20cf9  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-5_expressionHist.pdf
0e4a4d0c2fc5743c087c0214312f199ed9de175fbbca5403183ee7fe64732857  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-2_expressionHist.pdf
c30bb989d061f403e0f4ed179dd66f5cd99a4ca1d2129e01cfc6022d90ec52c4  ./JHG_RNA-seq/star_salmon/dupradar/histogram/HB_expressionHist.pdf
056dc37f4a2d8065fa2321173857838e76a47f6c1109dc46f72f8a433dd094d6  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-7_expressionHist.pdf
985fc56183b668776f1d878469e63285387706307ff964b6a1dc7037816de34d  ./JHG_RNA-seq/star_salmon/dupradar/histogram/DE-3C_expressionHist.pdf
4cb8116203cb87ba5873c9d42547d1aa68997b7fcf4491e380b66c831efd10a7  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-3_intercept_slope.txt
42fdb9b4cd659fd8f73bfc7d34b8db94ad267da8090b1f663efd5f9885e9a235  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-4_intercept_slope.txt
359a1490e69e44d9292131457e9cb4839212dbb6c0d4943a3a9eef71abc906c7  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-7_intercept_slope.txt
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b059a0d5d28a38764a3e4a0b81cb1a9d1b3623f5829ccd5503aa3adb5e9107d3  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-2_intercept_slope.txt
37ed3f57f60d4433f6c3de359a15bffa9663a8ea5c059247da3469f48983ec8f  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-3C_intercept_slope.txt
5bd1bad31780b27abee867b7197643a06d92ebe8bbe5e25e8a6d7c3d005d9e8d  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-1_intercept_slope.txt
c16dab9a1d6656c7012a5978fcdc998bb64620e4f8649536ca41be04830fa323  ./JHG_RNA-seq/star_salmon/dupradar/intercepts_slope/DE-6_intercept_slope.txt
9fe7e59c996432020cdba412a27fa1362f185b17a6668e3dcbe3839feaa27f89  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/HB_duprateExpBoxplot.pdf
9198e08630dd73ccef08e1c447e0ff333724dcc2d8934a149e2980e419229b59  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-4_duprateExpBoxplot.pdf
90f8131b5b6deac0d5cab3e003ba0cb7e9b1cfe96d904c7101a52b11d79051ab  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-2_duprateExpBoxplot.pdf
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47c43a843d0307bc807914af2853ccda3a71eeb3965600c4eb9439e0d38270e2  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-3_duprateExpBoxplot.pdf
55b55b746cb9c186a806e9b05bb81211e86ff3e70badb9018e2ccc896fb51810  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-3C_duprateExpBoxplot.pdf
4c6966a55d81affa46e21357c63c9ced5aa8c394cbbe3787ab5b714fd27801ad  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-6_duprateExpBoxplot.pdf
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4f1b8fed6ae72431487262a3955ff729dab18f8314c2ef457b25bc1a116ed9f7  ./JHG_RNA-seq/star_salmon/dupradar/box_plot/DE-7_duprateExpBoxplot.pdf
24fe547ffbb0c9c3d02318b99c0591f231fcba7d61ad4670d32c4b9ef1dea149  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-4_duprateExpDens.pdf
4f096a5274228b2e5efc0f1dbf8fdf285d4fd3903a31f3c906689b1e3f61f653  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-3_duprateExpDens.pdf
9a2f3e116f322a9bdfbe16c9f31fd20165254b87d89e3023171f2232e9367d64  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-6_duprateExpDens.pdf
9d8dfbe1a5f4dd3407c79548cd40fb1fd5a783789f471899e6479644352fcd59  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/HB_duprateExpDens.pdf
37103082afaffae8241f91c242b45c5c407f2b01e3380223991a43ea5d092281  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-1_duprateExpDens.pdf
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08dd08bfd01e1e4ff73a8f204f9f9b742ab0a320a20d35741cb22b83a7e3f632  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-7_duprateExpDens.pdf
ba76ace95873723ecd18c242f5fa2179e5bee441d42732d98433a0a982805044  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-2_duprateExpDens.pdf
16ac91c1b6a8af6155c5c662ec8d29064a61fd15b59843e780d6e9e4a1c57c0b  ./JHG_RNA-seq/star_salmon/dupradar/scatter_plot/DE-5_duprateExpDens.pdf
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41def69ef290dad8cac5a2a3b619d415811bf914aa3e680757ffc0cac5c84e32  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/pdf/DE-7.junctionSaturation_plot.pdf
5f731672245a6748b5ff431fb038493c301078a17503c7ff93d1572cffc4aa33  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/pdf/DE-5.junctionSaturation_plot.pdf
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c7d60b4cfeab8dddcb2a62c8b0ae09c658bbd29f4b3b8d38186bfb3ecb170798  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/rscript/DE-1.junctionSaturation_plot.r
7cd1025879f02b290d1fdc04237775157603ad0bd2efab336308c60b28317329  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/rscript/HB.junctionSaturation_plot.r
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10a61ce364c8162c532047e386f5d6f8c347b27f83fad6e6952407ef504cd975  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/rscript/DE-3C.junctionSaturation_plot.r
fa418780afdd0d5029695975bc179b9a522834f94edc33ef4913ffaf19cf2474  ./JHG_RNA-seq/star_salmon/rseqc/junction_saturation/rscript/DE-6.junctionSaturation_plot.r
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0398608db6ca15277bb71cbde2e0c9760ca87becd3805ddb0033a64cee913490  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.transcripts.gtf
87c08e6b293ba9333ad9ec7ad2409be00a91fb9c19c2553ee60ff3a0ca8a25d9  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.coverage.gtf
92d166dbb74db05f75e9e687e0097f656f277427f3705bbe7be3560c6f6904fc  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.gene.abundance.txt
898d188922a0ff45d88d547b8a626e7ce64812995e86baffe8baa2fa5ae441a6  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.coverage.gtf
879eea550ade336536dfab1babae592635b36b6638a62a2f5fe795d4e780fbd9  ./JHG_RNA-seq/star_salmon/stringtie/DE-1.coverage.gtf
529d8c041304f96aa7c6dfe26508aca8389310c9586cdeb7508bca10c7bcae36  ./JHG_RNA-seq/star_salmon/stringtie/HB.ballgown/i_data.ctab
39fd14d0db68e4022aaa2b4454ffdb711e9f0338c9838331c3b7c8c7e03bc344  ./JHG_RNA-seq/star_salmon/stringtie/HB.ballgown/i2t.ctab
1a18ca2fc4a0c527976bd88350d0cae3f5466961c3f9ff92e6a9afa6d9e00753  ./JHG_RNA-seq/star_salmon/stringtie/HB.ballgown/e_data.ctab
a365304eb124197e66021cf3e813774344db26870e3aee3e98bd713394ba8c59  ./JHG_RNA-seq/star_salmon/stringtie/HB.ballgown/t_data.ctab
5cffdf00dabde3d62d28fcd2207e0842e4a2dc718099ae56dffebf9c2f3a3d76  ./JHG_RNA-seq/star_salmon/stringtie/HB.ballgown/e2t.ctab
2c88d6e75d9b3ebdbdd9d24d1dcd75431ef51bc24b10f2a8cc8f62ef0919f5bd  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.coverage.gtf
8e5775ef3af1aacd2b3afd9b117b4012d4c680938ab775724792172a09dc2bc3  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.ballgown/t_data.ctab
5cffdf00dabde3d62d28fcd2207e0842e4a2dc718099ae56dffebf9c2f3a3d76  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.ballgown/e2t.ctab
39fd14d0db68e4022aaa2b4454ffdb711e9f0338c9838331c3b7c8c7e03bc344  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.ballgown/i2t.ctab
92113542716226e94cad19f22c3eba84e41d178f98eb77ee45bfa1eb910d8984  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.ballgown/e_data.ctab
0b14b72159b37297c5110f8ea8cae0041aae0f6c7921019f25a12037612ba394  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.ballgown/i_data.ctab
1dda57bbee94b065a498e33ffc6705b0bb909906291a46e2f06f47874ca971fb  ./JHG_RNA-seq/star_salmon/stringtie/DE-3.coverage.gtf
1a6731c54c6663aaff9bc4b4ff7e6ea72fcdced39c975fef4020b06b9bda167d  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.gene.abundance.txt
07a41f96900725ddb619b21d9afab988220542a8ee99b8295e4545c3695dedcb  ./JHG_RNA-seq/star_salmon/stringtie/DE-4.transcripts.gtf
803d3f8c76624ad2e34d5cddf8372f209c923d88e16623503a543fbdf1ddd391  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.ballgown/e_data.ctab
5cffdf00dabde3d62d28fcd2207e0842e4a2dc718099ae56dffebf9c2f3a3d76  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.ballgown/e2t.ctab
de8198b3df4ed595b9b1cf5a6446452d03a7ff7da4256aca2a1763754b42f430  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.ballgown/i_data.ctab
9fd3fbcf53f1bed6e1bed181d3ce167f8b54bfa8acba1d065aeed0333ef4651c  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.ballgown/t_data.ctab
39fd14d0db68e4022aaa2b4454ffdb711e9f0338c9838331c3b7c8c7e03bc344  ./JHG_RNA-seq/star_salmon/stringtie/DE-2.ballgown/i2t.ctab
34c4510e3677554a88c494369fd1b9299ffec8cfb354115e19dcbbd6883f907e  ./JHG_RNA-seq/star_salmon/stringtie/DE-7.transcripts.gtf
41bef007b276e69101462cf8dc3841f603a1468a51cf052d6697baaf1fe27b48  ./JHG_RNA-seq/star_salmon/stringtie/DE-6.transcripts.gtf
6bdb7fd625522b3bb0a7a3214cb985f075aa7d669efa0c5334efbd362649d3f0  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.ballgown/t_data.ctab
5cffdf00dabde3d62d28fcd2207e0842e4a2dc718099ae56dffebf9c2f3a3d76  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.ballgown/e2t.ctab
a58189ee2ed294a5d120b58a225822ba617819a6a2f0b195203ecec1b5e9a8ea  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.ballgown/e_data.ctab
39fd14d0db68e4022aaa2b4454ffdb711e9f0338c9838331c3b7c8c7e03bc344  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.ballgown/i2t.ctab
263c77b16877fb70655282a101aa6d7e51d7b696d3cabedf343d9d30844ee048  ./JHG_RNA-seq/star_salmon/stringtie/DE-5.ballgown/i_data.ctab
709bcb3e8311eac31de5346306638de2531f3731e4db25147ff3e745e4f9f004  ./JHG_RNA-seq/star_salmon/stringtie/HB.coverage.gtf
846278d6b8c2c434348eda39890618350d464743d4a52a04743b43df0486e822  ./JHG_RNA-seq/star_salmon/stringtie/DE-7.gene.abundance.txt
39fd14d0db68e4022aaa2b4454ffdb711e9f0338c9838331c3b7c8c7e03bc344  ./JHG_RNA-seq/star_salmon/stringtie/DE-3C.ballgown/i2t.ctab
e7448ccc8c521e97a7ac4c3113a6b7b6f68ae09e9f99c23ecd5ac8db41d5e0b1  ./JHG_RNA-seq/star_salmon/stringtie/DE-3C.ballgown/t_data.ctab
beeed83635add34206007889741b54e03a762e387694195833841c3b783f6815  ./JHG_RNA-seq/star_salmon/stringtie/DE-3C.ballgown/i_data.ctab
66774e759b6fc29a9ce0ae255860f003f3cf4810fd33024c1da9f17bd66fae41  ./JHG_RNA-seq/star_salmon/stringtie/DE-3C.ballgown/e_data.ctab
5cffdf00dabde3d62d28fcd2207e0842e4a2dc718099ae56dffebf9c2f3a3d76  ./JHG_RNA-seq/star_salmon/stringtie/DE-3C.ballgown/e2t.ctab
648403c3f97b9f5daf41a81877dd26c6e01789b8a9b9f8a85d7c2138d7d62017  ./JHG_RNA-seq/star_salmon/HB/libParams/flenDist.txt
5600a9e5dbec408768c8282de45a39de23c2917e95c1c24705d9e4022f09d85a  ./JHG_RNA-seq/star_salmon/HB/quant.genes.sf
82346bdaf7c934ac3184fc38d63ef6d764fd5037579ec43d9caa8a2c1b1ea0b5  ./JHG_RNA-seq/star_salmon/HB/cmd_info.json
5dbde8c9218f9863c3f9cbc0aba33a0943b6ecd3877d22a2f5cd5fcef22c5567  ./JHG_RNA-seq/star_salmon/HB/quant.sf
84909381a2342c992bbeef3add5060c20075abb07eba122ed9cab085bf8f4c78  ./JHG_RNA-seq/star_salmon/HB/logs/salmon_quant.log
37606bceb265f7bc709f9492dd913af9f4588566a7d844ef2458a420fff46c0f  ./JHG_RNA-seq/star_salmon/HB/aux_info/ambig_info.tsv
7f70552d1ce11a7f78b9551e47f851efe7bc5efc285781f6b51a06744b3c5b2b  ./JHG_RNA-seq/star_salmon/HB/aux_info/fld.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/HB/aux_info/observed_bias.gz
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/HB/aux_info/expected_bias.gz
e9c8e637cb856a021e6b9dfbf1caefa4eefe6a115d3e3c8cee288304d355da16  ./JHG_RNA-seq/star_salmon/HB/aux_info/meta_info.json
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/HB/aux_info/observed_bias_3p.gz
71ecd5fc6e06525d2e8032de59fd8ec0063e4494adc8bcc1b934398afd34a2a7  ./JHG_RNA-seq/star_salmon/bigwig/HB.reverse.bigWig
82f57f50de4495637392e938a36e20a97f9a99fff87cede02b4cf7683d1f39fb  ./JHG_RNA-seq/star_salmon/bigwig/DE-7.reverse.bigWig
dcdda00fa8c9f4b4ef6192f9019b7e7244684a6de584e1def7799383c9d0d01b  ./JHG_RNA-seq/star_salmon/bigwig/DE-5.forward.bigWig
5a99ae2f3d787a9d267923b7f88bf15dea9e9d72a781642cf7333d09c0761601  ./JHG_RNA-seq/star_salmon/bigwig/DE-2.forward.bigWig
2098a1187c0e70507a776f60a7c3c138b0a62922b1e751b3418522e5c1fe5dc1  ./JHG_RNA-seq/star_salmon/bigwig/DE-5.reverse.bigWig
e7689c5961c0f16fcb4bd3b261a2133ebe56194984428ce441193d7b75025777  ./JHG_RNA-seq/star_salmon/bigwig/DE-2.reverse.bigWig
b3aa8beb8891b2908aded027d13c993fb64ffa918fe296558a7a973420476c46  ./JHG_RNA-seq/star_salmon/bigwig/HB.forward.bigWig
d8ab8a4723d2fb2c6fa33ddb355da50769a860d63d86cbf4cb2ba270c6789b65  ./JHG_RNA-seq/star_salmon/bigwig/DE-7.forward.bigWig
8ed497bad2dc1da9532cd5a623a0e5ac918cf4e083b4afde8760a30d005f766f  ./JHG_RNA-seq/star_salmon/bigwig/DE-1.forward.bigWig
759bd6c06483abf8813f99b5acb8e3a43d6dcb0feb0de60b9f90ef5a0b570493  ./JHG_RNA-seq/star_salmon/bigwig/DE-3C.forward.bigWig
c0f1975011b58c1a84d1b850c379908328f36ba8a98b13eff18e97b4bbce14af  ./JHG_RNA-seq/star_salmon/bigwig/DE-6.forward.bigWig
9d29dba628dd8fc601518f8697b06bdb027a90abd754ba653c323881873f00ea  ./JHG_RNA-seq/star_salmon/bigwig/DE-4.reverse.bigWig
406e3c777ccaaef8bf2a0eb53e141e149c7d14a028a5cc02a418196d4f9ea897  ./JHG_RNA-seq/star_salmon/bigwig/DE-3.reverse.bigWig
e8ac2d377906fc98c8e15fcd247153b2ea92fa27250a5604349f1df25c9d9c1a  ./JHG_RNA-seq/star_salmon/bigwig/DE-4.forward.bigWig
8873477e69c5e27445ed962baefb56d92a535dc75c809e96a34657532f2342b9  ./JHG_RNA-seq/star_salmon/bigwig/DE-3.forward.bigWig
ca212cbb61d9701b89c4e411d4e052ec7d59c23184465fe018c452e37979875f  ./JHG_RNA-seq/star_salmon/bigwig/DE-1.reverse.bigWig
49cb152a812c077eb6618446be52e86ccf7bd288bb2f3c8aef73f885f3921464  ./JHG_RNA-seq/star_salmon/bigwig/DE-3C.reverse.bigWig
dd32e399e219b5117dc2c0e1e95115d94677340fb5427528b38e1190e220f3f9  ./JHG_RNA-seq/star_salmon/bigwig/DE-6.reverse.bigWig
dab224661fc01b3bb63891f8b37a2d274763cb7ac117983727e0a6237107ba97  ./JHG_RNA-seq/star_salmon/deseq2_qc/deseq2.sample.dists.txt
7c3f188c9a075778954468bd97f65fe2d934685a70ef440e30e6f003bbca1885  ./JHG_RNA-seq/star_salmon/deseq2_qc/deseq2.dds.RData
3a364e162ac3a5c99f009de08e817d163ce2464121b5854675f5fea2506806b6  ./JHG_RNA-seq/star_salmon/deseq2_qc/deseq2.plots.pdf
927a8cebee12724a07a6af60d0e0121706cc88b5a60a1d7c239bf800eaf6969e  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/deseq2.size_factors.RData
055134587af91f2695effc08620e217b048bbd8d82af73cd7dc107e54a4ea7db  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.7.txt
9bae715431773b461d197cb037c88ddc81a72ada6719ca64fad9356e3bf22ea5  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.6.txt
32e8f5442c8bd9e68801fe9182317bce264b2b49454dedef11b0072dd7bcb17b  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.1.txt
1d5ba334aced59b8a63d422116f381f24a0a762860355b93e81b3b3792afdca0  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/HB.txt
ae6a0f47b73f9f88f253326468942d20f1a91f8b4b34baf6d3fd7b4487af53d7  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.2.txt
331b2ceb16044c4881549e51d1803a028f72496870824cd0a6dbe0ea32f0fb5a  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.5.txt
cd3a073360191f585f47424685fb70e40157c12686a669cbcdafc2a0041b83ec  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.3C.txt
d1d05cf80ef714517c41bcba61f9a46ebc149c6bf866af35ee081beb0ae492ab  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.4.txt
cead3610bee7fedd165f2e8605f082eb643b2533e1e625707f380528a323a4e5  ./JHG_RNA-seq/star_salmon/deseq2_qc/size_factors/DE.3.txt
bca169d66a584690b123dc03bf8fc1e0221e615566d9701805dc7dd4e2037d48  ./JHG_RNA-seq/star_salmon/deseq2_qc/deseq2.pca.vals.txt
50351dc5cb78e2969a95c4549a543f37cf133e6f76c58164ea142f755a63adc2  ./JHG_RNA-seq/star_salmon/deseq2_qc/R_sessionInfo.log
f145232fda8ab7290d7e3f20b7976be72abac481b542b427048e38b1039bfb4a  ./JHG_RNA-seq/star_salmon/salmon.merged.gene_lengths.tsv
a919b7f347843fb2c1fdb9be196fc1f63e7197b74a696ff198d5c30989693558  ./JHG_RNA-seq/star_salmon/salmon.merged.gene_counts_scaled.tsv
fb7cca208193dbbf3cb519de338238ac716ffb37e5459dcb4b9174bebd04db8f  ./JHG_RNA-seq/star_salmon/DE-4/quant.genes.sf
f915a4fae850db035f7ced41a80e0ffa98db4f505baf0d0a486aedc37e30764f  ./JHG_RNA-seq/star_salmon/DE-4/cmd_info.json
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/observed_bias_3p.gz
e477defa3b83e2e8b84a7df88f48d8c714eaa2583d5a5cb56272a36bb921c57d  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/meta_info.json
1949b24e593603d59a1bee5dca692bd970ac78696fb368b5cded32717c279674  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/fld.gz
268574df9aa3e10c53cf845f24203faf49f299722d7ef096fee59a8bf2f3962d  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/ambig_info.tsv
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/expected_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-4/aux_info/observed_bias.gz
7f0d5902db0eb20d1ce55ace10e21d043029bec6f7f63547a2c28796e0c39e33  ./JHG_RNA-seq/star_salmon/DE-4/libParams/flenDist.txt
9c16cfdb5f318c2b2576c78fc46834939bb998592e4e6bd6667de1cb4143bb3a  ./JHG_RNA-seq/star_salmon/DE-4/logs/salmon_quant.log
894514c863542102cf06fe1e633a84f7788f9b476d336b492cb896c883ac99fc  ./JHG_RNA-seq/star_salmon/DE-4/quant.sf
3acc991a65a857028ae351b4fd6e83cb8ba60ae6dc352da6004b9b67fc80c653  ./JHG_RNA-seq/star_salmon/tx2gene.tsv
59410065033104b8c4bf651ca5ffae12e4979932366d864604624e5e847a7c8a  ./JHG_RNA-seq/star_salmon/salmon.merged.transcript_tpm.tsv
91f4ae9ea521a56435b408b1619444110b279b90ef3ec301194e88ea55671a6f  ./JHG_RNA-seq/star_salmon/DE-3/cmd_info.json
2431238a57e9568fb0af5d623ca5e6a61cd1f99dbf85f142df7a8ffd5e4704b4  ./JHG_RNA-seq/star_salmon/DE-3/libParams/flenDist.txt
a6d83b9c9c99ba88d6d6da458421201f324bc1e743bee2b34f71107893362547  ./JHG_RNA-seq/star_salmon/DE-3/quant.sf
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/observed_bias_3p.gz
4fd777aa7f863a78c072a2b8f2aefac9ed9d6d6de332113fbe1adcb9632c7181  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/expected_bias.gz
5026e8534eece566358cc949606b89ededf87f44940b7c471b8791f0e19af101  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/observed_bias.gz
620edd4af207f8026f288b834f352118bdc93e7eb3cf0d6af015e443f5fae88e  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/fld.gz
a10f9225347ae799047bc1331fa1d9dbbe6ab619319aae5ca4996c4a6fd6ea16  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/ambig_info.tsv
f3221c0ea86ddd6d0432e1e544ad2e38990e60fa5e14cf461f3804ad7112de1e  ./JHG_RNA-seq/star_salmon/DE-3/aux_info/meta_info.json
1833db7b3aa2f50aefc02fc46e1614dd41d77f6a513022179f2dc577e0b20d69  ./JHG_RNA-seq/star_salmon/DE-3/logs/salmon_quant.log
1768ab29e059b3ddaa8a479c0e3d03c770bb5a635ac21ce00defa949a5e600a8  ./JHG_RNA-seq/star_salmon/DE-3/quant.genes.sf
ebd8ef9489aad9a1ef414a9c0d48dd748cf305a0f71fb5d39090c7c3d8c58c6d  ./JHG_RNA-seq/DE-2_S12_L001_R1_001.fastq.gz
ceede1ffa160631ad9df86e768e3f8e10d33de6dd765379820ec4eb6b29917d6  ./JHG_RNA-seq/DE-7_S18_L001_R1_001.fastq.gz
c81cf27c47f77b2d4c9b0934cd577eaa71c2c19ec95902bfcdc5ec7e110290ef  ./JHG_RNA-seq/JHG_RNA-seq_460735062.json
4c077eb808d847db4a6997767721746405b7abeb23aa10106039415443ca431b  ./JHG_RNA-seq/DE-7_S18_L001_R2_001.fastq.gz
f12702e9b45615fb6385a5c059fad4202855c612c6376c8507cbb0f21c0ca0d3  ./JHG_RNA-seq/DE-3_S13_L001_R2_001.fastq.gz
3f7d831a95c4241ce11285333a26ca11045b2c39dc434a0bf9284d43a86b43a3  ./JHG_RNA-seq/DE-4_S15_L001_R1_001.fastq.gz
8af2580b493a6781c8b63f0c512fc5fd09a8afda490edcb6cbde8e1b274277ae  ./JHG_RNA-seq/DE-3_S13_L001_R1_001.fastq.gz
4b9f7e38c69ec7ac9f19c3b1d542bffb81d394aa6f51bbdff957b264e3f15d1e  ./JHG_RNA-seq/DE-4_S15_L001_R2_001.fastq.gz
a335573e0a44ddccb8fab9b7a1d1d280f3d94a6212686eebf2768fd15863eaf2  ./JHG_RNA-seq/HB_S19_L001_R2_001.fastq.gz
19a0c6c8a10d20f8d20cf20b7f947125443c30ae5fb8660d3c47499e9156fad7  ./JHG_RNA-seq/rRNAFilter.zip
c8771c205966efc964a530bf13319be5f429a019a2fc1a93f11b11968cb472dd  ./JHG_RNA-seq/rRNAFilter/rRNAFilter_commandline.jar
4e7f040a95246d6ce43fa2809a6726ff0a844cef33b9381dad47a585d3603c08  ./JHG_RNA-seq/rRNAFilter/count
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903c7f62cd6e8c406a7f1755dfe4b386e0064cc05fed467f63adab6ab2d05cd7  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_per_base_n_content_plot.txt
4f09595b9b404203e0f56b11ad62fdf999ed52cff76a36e613c41fc51ea42ee3  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_general_stats.txt
64753eb1772e00f3ca9ff24d293e7a425e77bbd57f60d79b1127c37eb0793fec  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw-status-check-heatmap.txt
dd609c5f06dab88e4e79d35d3c1159ce882857bd94794d497a07d4ffbccda5d0  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_citations.txt
a82fa3341848a5bfabbc093c4910bb61d83268c8814b26c589d33b383ad1a013  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_bam_stat.txt
bee51b0044823028ab25f3ad9a34e1711364ad58cd59f23f7ea9a878415631c6  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_samtools_flagstat.txt
453edc34b8e4afc5c2d6241c5763fbddb7425de0c4a99557759ef4be698ab359  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_read_distribution_plot.txt
1bfd6869d799eb0e9b4361f2e8bff9da0cb2e36997c7f1ffbfebaa8640b40c9d  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw_sequence_counts_plot.txt
722dbb620a4400afa1bb50fbd8bb9886fbce76df1709a7ac76d184b0f6250558  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_read_dups_plot.txt
1d6003bda69e323b91684a403d9d6997cc58ff05a4d4f3e44b320ddfcfb86047  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_rseqc_read_distribution.txt
83737c54e914272953a1eb83c5b29fa4bd5e39490593afd4a3de55b8d99cbcd4  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/samtools-idxstats-xy-plot.txt
c2e49229e78943de9a8c0257bffdb29de3fa7889f51f82c6ffc96085a8977905  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_junction_saturation_all.txt
0ef48b91c5b2e80cbddebef04c89c029f97805466c224f456ea0910b4df4e993  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/samtools-stats-dp.txt
29bcd6b68893d06ab25a6ce174e00f298c1f89432ea00b46eeb9a81463f75115  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_sample-relationships.txt
4d03f70ccc6bff1420b313cd4ac6bc844d9bb4028ad01710340cc9ee84274fa0  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_samtools_stats.txt
06f437e9b6d12c0d7795769050de2e461255dac335ae3b7dbdc9d46168415909  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/samtools-flagstat-table.txt
5782700e76b91d874c8763e627f8d3e8917a38fe2bb7b3989988c3369a0f7a99  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/BETA-multiqc.parquet
f2013d0daef16792806ba0ac7309da3c000549e7b8d1f6ccd5cc7db1e8b8cbd1  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw_top_overrepresented_sequences_table.txt
5c8c4f253682a132a1e07c2f586e3dabb71b31ab55274fdebda9e4aee1baa6cd  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/star_alignment_plot.txt
c889a68186fede4148feeec6bffc0af64e91e732e1b6f6314162da41605fbe4c  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_junction_saturation_plot_Novel_Junctions.txt
5292aae53b4f6d8a9363301024629e1f0ef138916114166075a27368369bd171  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt
9121632e442fa0f6493e464a17bf6a93091044a05ef531d803e02591bf4434f4  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw_sequence_duplication_levels_plot.txt
1ae28f30db0eab2685af232c233365f731ecf0c29338dcf8f267acaf5b39f754  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_inner_distance_plot_Counts.txt
a7227203544ef3eb7a22a3537916300f08b2a693c05ea81eec3aaf8908a4274b  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/picard_deduplication.txt
749d964d8c44636d8664868bf65678ff71fa6f56b67a748ede56e410bd299c92  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_top_overrepresented_sequences_table.txt
1be6470b90ea7648a4f82cdaf47e22f2da1e1b5405cd62386ef21d163a11a430  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_sample-relationships_1.txt
da4b7735f16495d65ac655eeaa80906bead7ab50cecbfd6300faba3dd34eb773  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc.log
8c9b9fa0ce2e6fac0410ae0c0d91627682b24d74d6809c9c545b4551b576c6c9  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_star.txt
7bb9bfbd3f7d6e96e1670fadfa61fee0a34db54cb3a7d79fdb35d633b0d40844  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_rseqc_infer_experiment.txt
b3e84ee5f40e846aef2ff1afd148cf1a7e8b5ace772132d490403bf955b9f441  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_rseqc_junction_annotation.txt
7d5bab7d1eaa07ea15f33e887d20707b7ceabdb27b00290696506bcd8cc06660  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_sequence_duplication_levels_plot.txt
ec6de851955bd54b0e54ac6fba6b3cac5efbb868cf3ca4d21723e86e394219e6  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/star_summary_table.txt
5c04460df60b4fb76b90d09d29d9de43d64055ded432830f4a089fc240d22165  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/samtools-idxstats-mapped-reads-plot_Raw_Counts.txt
9d0889827be19f899af85eb3fe1338d0affe9997e15fdcb5d62f2cf193ac1e0f  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_fastqc_fastqc_raw.txt
84031f7587a7d279e34472ba0ba99cbed262005ab9421c700d37e2012c272f22  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw_per_sequence_gc_content_plot_Percentages.txt
599a6f509f77df11cb92c88f4bd5c35ee92c97b81c28db3a1984725064a0ad30  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/cutadapt_filtered_reads_plot.txt
965a5966b8a7ac6d5131073fc52f66e92506cd1ca84a1e36a53a1aa367ee8bf0  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_per_sequence_quality_scores_plot.txt
7be2c7e0bd21fb4c1a3bcd2054d5fd07d4f2a2a460bb5c73bdc8db5d5df56a17  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_junction_saturation_plot_Known_Junctions.txt
1342aa1b4dd8d0703d14158174ba3f549352b1f2558df51fec857cb98e687f7a  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_infer_experiment_plot.txt
955d3e34fe3984054edd732897b2288c3f77693c97a8e5ec87843da0a8b20ecf  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_cutadapt.txt
3360c35eca57358a8a2b668ccd1c3f3b2c56adec36211713731bd4b4fe91756e  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_junction_saturation_plot_All_Junctions.txt
28f4da2b65acac63519d4c07d560b20e89ce190302bd3d51732630698ccb96d3  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_junction_annotation_junctions_plot_Junctions.txt
658650aa65f20fbdf806b180215844b8a236483aeaaf5976faa720d14cf77e52  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_dupradar.txt
6b5a3adc4b4bcde1ccbbf1b36174c8b532d3faa317e2ff0d33729fe9686c56be  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_overrepresented_sequences_plot.txt
db65c7ed13f74c7a4def62d427970af1c488e0901f89440eebac294b7a79033a  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/samtools_alignment_plot.txt
7bc307602304ee8767f677528957e22e7f8ed2b5b28b6ba3d4f8fee85f14d083  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_fail_strand_check_table.txt
164e0f937d2281c8b2ef503d01e1080e7e3ed6d6ef204de81f85fa46e0aa6571  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_per_sequence_gc_content_plot_Percentages.txt
dc925502cf3f8a3633e5e69cd6b5bdb14d1cb9b4daa6082100bacf0fbb7848db  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/rseqc_inner_distance.txt
460847908f87a4a470dd3fc1ab6f55011673f1a1b5a8b7f498a417a6b8a5d079  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/qualimap_rnaseq_cov_hist.txt
e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt
87fa2e3ff6a1229999f32ee85d3efd509a4d1b03b234af1c01eb665704ef39a2  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/junction_saturation_known.txt
1de73930b49b21dc327544896ff12c23978308d02e878c8efe93114ecc4f0de5  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_raw_per_sequence_quality_scores_plot.txt
03091a13f668c138ac8630dea96c590e64f1f51cd3df7eb23e159636eb6369fb  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_software_versions.txt
a2d71229e3f82f99f32f1e4609b6756d633eb62252e561213a643f266c3d9f2f  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_sequence_length_distribution_plot.txt
f28db3ac4b15bb48beb70813adad79a15fda38b24b319e7702a05a1f44e93d66  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/fastqc_trimmed_per_base_sequence_quality_plot.txt
604811e39e853f5dba497d7e7cb779c63892d3ba0717b11175b692278d983178  ./JHG_RNA-seq/multiqc/star_salmon/multiqc_report_data/multiqc_data.json
2d1cbcf3cf5dc6515d75481e6f2dcc0c686c5d037f5451f375159b30ec19fbb8  ./JHG_RNA-seq/DE-1_S11_L001_R2_001.fastq.gz
34bd0214da7c23c48e939f18a50d899d3e47dab55caa55e95f0ea14b806d9d8b  ./JHG_RNA-seq/DE-6_S17_L001_R1_001.fastq.gz
27df2ebca7f3452d60c3865b186d7690c5efc4c8a91b0c78efabd4b09ea3d52d  ./JHG_RNA-seq/DE-1_S11_L001_R1_001.fastq.gz
f59aec97c2d7dfdb6c92c26b8d28913878ac0df5aec8cb2a74e4e4bae6701e56  ./JHG_RNA-seq/DE-6_S17_L001_R2_001.fastq.gz
e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855  ./hui