Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC'

Caused by:
  Process `NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC` terminated with an error exit status (1)


Command executed:

  multiqc \
      -f \
       \
       \
      .
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC":
      multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
                 ^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 293, in _perform_transform
      self._ensure_kaleido()
    File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 198, in _ensure_kaleido
      raise ValueError(message)
  ValueError: Failed to start Kaleido subprocess. Error stream:
  
  [0722/104018.903476:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/104018.980202:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/104018.980265:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/104019.067249:WARNING:discardable_shared_memory_manager.cc(194)] Less than 64MB of free space in temporary directory for shared memory files: 0
  [0722/104019.373037:ERROR:platform_shared_memory_region_posix.cc(250)] Creating shared memory in /abyss/gibcus/gibcus_mnt_genomics/basespace/tmp/.org.chromium.Chromium.mXKHBr failed: No such file or directory (2)
  [0722/104019.373086:ERROR:platform_shared_memory_region_posix.cc(253)] Unable to access(W_OK|X_OK) /abyss/gibcus/gibcus_mnt_genomics/basespace/tmp: No such file or directory (2)
  Received signal 6
  #0 0x5568e6113d79 base::debug::CollectStackTrace()
  #1 0x5568e6091633 base::debug::StackTrace::StackTrace()
  #2 0x5568e611395b base::debug::(anonymous namespace)::StackDumpSignalHandler()
  #3 0x7f51f6948050 (/usr/lib/x86_64-linux-gnu/libc.so.6+0x3c04f)
  #4 0x7f51f6996e2c (/usr/lib/x86_64-linux-gnu/libc.so.6+0x8ae2b)
  #5 0x7f51f6947fb2 gsignal
  #6 0x7f51f6932472 abort
  #7 0x5568e60bf30a base::internal::OnNoMemoryInternal()
  #8 0x5568e60bf329 base::(anonymous namespace)::OnNoMemory()
  #9 0x5568e60bf319 base::TerminateBecauseOutOfMemory()
  #10 0x5568e60a90ab base::FieldTrialList::InstantiateFieldTrialAllocatorIfNeeded()
  #11 0x5568e60a9239 base::FieldTrialList::CopyFieldTrialStateToFlags()
  #12 0x5568e4c04f82 content::GpuProcessHost::LaunchGpuProcess()
  #13 0x5568e4c03910 content::GpuProcessHost::Init()
  #14 0x5568e4c036c2 content::GpuProcessHost::Get()
  #15 0x5568e5020b6e base::internal::Invoker<>::RunOnce()
  #16 0x5568e60d7306 base::TaskAnnotator::RunTask()
  #17 0x5568e60e8cf6 base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::DoWorkImpl()
  #18 0x5568e60e89ea base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::DoWork()
  #19 0x5568e6135899 base::MessagePumpLibevent::Run()
  #20 0x5568e60e959b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run()
  #21 0x5568e60c29bd base::RunLoop::Run()
  #22 0x5568e4aaaf18 content::BrowserProcessSubThread::IOThreadRun()
  #23 0x5568e6101874 base::Thread::ThreadMain()
  #24 0x5568e6123caa base::(anonymous namespace)::ThreadFunc()
  #25 0x7f51f6995134 (/usr/lib/x86_64-linux-gnu/libc.so.6+0x89133)
  #26 0x7f51f6a157dc (/usr/lib/x86_64-linux-gnu/libc.so.6+0x1097db)
    r8: 0000000000000000  r9: 000024737ef60231 r10: 0000000000000008 r11: 0000000000000246
   r12: 0000000000000006 r13: 00005568e2a37eb0 r14: 000024737ee7acc0 r15: 000024737ef5c180
    di: 000000000000023a  si: 0000000000000241  bp: 00007f51f45a36c0  bx: 0000000000000241
    dx: 0000000000000006  ax: 0000000000000000  cx: 00007f51f6996e2c  sp: 00007f51f45a2070
    ip: 00007f51f6996e2c efl: 0000000000000246 cgf: 002b000000000033 erf: 0000000000000004
   trp: 000000000000000e msk: 0000000000000000 cr2: 0000000000000008
  [end of stack trace]
  Calling _exit(1). Core file will not be generated.

Work dir:
  /abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/a0/d91aec246d89741a2e687f9d3320df

Container:
  /abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/singularity/depot.galaxyproject.org-singularity-multiqc-1.23--pyhdfd78af_0.img

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`