The exit status of the task that caused the workflow execution to fail was: 255.
The full error message was:
Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC'
Caused by:
Process `NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC` terminated with an error exit status (255)
Command executed:
multiqc \
-f \
\
\
.
cat <<-END_VERSIONS > versions.yml
"NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC":
multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
END_VERSIONS
Command exit status:
255
Command output:
(empty)
Command error:
INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred
INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
WARNING: skipping mount of /sharehome/gibcus/tmp/dev/shm: stat /sharehome/gibcus/tmp/dev/shm: no such file or directory
INFO: Terminating squashfuse_ll after timeout
INFO: Timeouts can be caused by a running background process
FATAL: container creation failed: mount hook function failure: mount /sharehome/gibcus/tmp/dev/shm->/dev/shm error: while mounting /sharehome/gibcus/tmp/dev/shm: mount source /sharehome/gibcus/tmp/dev/shm doesn't exist
Work dir:
/abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/61/0815aec2990b5577c940670238c925
Container:
/abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/singularity/depot.galaxyproject.org-singularity-multiqc-1.23--pyhdfd78af_0.img
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow run nf-core/chipseq -r 2.1.0 --input ./20250718_ChIP.csv --outdir ./results --genome GRCh38 --read_length 150 --narrow_peak -resume -profile custom_singularity23b304ebac3425a89ad32293fc2c277e81d6e63f-b074-4ac1-b86f-c35fa983b604https://github.com/nf-core/chipseq, revision 2.1.0 (commit hash 76e2382b6d443db4dc2396e6831d1243256d80b0)These plots give an overview of the distribution of resource usage for each process.
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