Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC'

Caused by:
  Process `NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC` terminated with an error exit status (1)


Command executed:

  multiqc \
      -f \
       \
       \
      .
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC":
      multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
                 ^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 293, in _perform_transform
      self._ensure_kaleido()
    File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 198, in _ensure_kaleido
      raise ValueError(message)
  ValueError: Failed to start Kaleido subprocess. Error stream:
  
  [0722/092557.665744:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/092557.773455:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/092557.774395:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale 
  [0722/092557.866706:WARNING:discardable_shared_memory_manager.cc(194)] Less than 64MB of free space in temporary directory for shared memory files: 0
  [0722/092558.218175:ERROR:platform_shared_memory_region_posix.cc(250)] Creating shared memory in /abyss/gibcus/gibcus_mnt_genomics/basespace/tmp/.org.chromium.Chromium.phXSoZ failed: No such file or directory (2)
  [0722/092558.218210:ERROR:platform_shared_memory_region_posix.cc(253)] Unable to access(W_OK|X_OK) /abyss/gibcus/gibcus_mnt_genomics/basespace/tmp: No such file or directory (2)
  Received signal 6
  #0 0x560c67a45d79 base::debug::CollectStackTrace()
  #1 0x560c679c3633 base::debug::StackTrace::StackTrace()
  #2 0x560c67a4595b base::debug::(anonymous namespace)::StackDumpSignalHandler()
  #3 0x7ff5d0bd2050 (/usr/lib/x86_64-linux-gnu/libc.so.6+0x3c04f)
  #4 0x7ff5d0c20e2c (/usr/lib/x86_64-linux-gnu/libc.so.6+0x8ae2b)
  #5 0x7ff5d0bd1fb2 gsignal
  #6 0x7ff5d0bbc472 abort
  #7 0x560c679f130a base::internal::OnNoMemoryInternal()
  #8 0x560c679f1329 base::(anonymous namespace)::OnNoMemory()
  #9 0x560c679f1319 base::TerminateBecauseOutOfMemory()
  #10 0x560c679db0ab base::FieldTrialList::InstantiateFieldTrialAllocatorIfNeeded()
  #11 0x560c679db239 base::FieldTrialList::CopyFieldTrialStateToFlags()
  #12 0x560c66536f82 content::GpuProcessHost::LaunchGpuProcess()
  #13 0x560c66535910 content::GpuProcessHost::Init()
  #14 0x560c665356c2 content::GpuProcessHost::Get()
  #15 0x560c66952b6e base::internal::Invoker<>::RunOnce()
  #16 0x560c67a09306 base::TaskAnnotator::RunTask()
  #17 0x560c67a1acf6 base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::DoWorkImpl()
  #18 0x560c67a1a9ea base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::DoWork()
  #19 0x560c67a67899 base::MessagePumpLibevent::Run()
  #20 0x560c67a1b59b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run()
  #21 0x560c679f49bd base::RunLoop::Run()
  #22 0x560c663dcf18 content::BrowserProcessSubThread::IOThreadRun()
  #23 0x560c67a33874 base::Thread::ThreadMain()
  #24 0x560c67a55caa base::(anonymous namespace)::ThreadFunc()
  #25 0x7ff5d0c1f134 (/usr/lib/x86_64-linux-gnu/libc.so.6+0x89133)
  #26 0x7ff5d0c9f7dc (/usr/lib/x86_64-linux-gnu/libc.so.6+0x1097db)
    r8: 0000000000000000  r9: 00001e0a45c183b1 r10: 0000000000000008 r11: 0000000000000246
   r12: 0000000000000006 r13: 0000560c64369eb0 r14: 00001e0a45b32cc0 r15: 00001e0a45bee2c0
    di: 00000000000002a1  si: 00000000000002be  bp: 00007ff5ce82d6c0  bx: 00000000000002be
    dx: 0000000000000006  ax: 0000000000000000  cx: 00007ff5d0c20e2c  sp: 00007ff5ce82c070
    ip: 00007ff5d0c20e2c efl: 0000000000000246 cgf: 002b000000000033 erf: 0000000000000004
   trp: 000000000000000e msk: 0000000000000000 cr2: 0000000000000008
  [end of stack trace]
  Calling _exit(1). Core file will not be generated.

Work dir:
  /abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/2e/186b0a49a2084db57bca69192ba5f8

Container:
  /abyss/gibcus/gibcus_mnt_genomics/basespace/LY_Chip-seq/work/singularity/depot.galaxyproject.org-singularity-multiqc-1.23--pyhdfd78af_0.img

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`