#==================================================
#All numbers are READ count
#==================================================

Total records:                          176633950

QC failed:                              0
Optical/PCR duplicate:                  50396605
Non primary hits                        18942347
Unmapped reads:                         0
mapq < mapq_cut (non-unique):           2883522

mapq >= mapq_cut (unique):              104411476
Read-1:                                 52208508
Read-2:                                 52202968
Reads map to '+':                       52205636
Reads map to '-':                       52205840
Non-splice reads:                       77057601
Splice reads:                           27353875
Reads mapped in proper pairs:           104382862
Proper-paired reads map to different chrom:0