#==================================================
#All numbers are READ count
#==================================================

Total records:                          179036830

QC failed:                              0
Optical/PCR duplicate:                  49301601
Non primary hits                        17417642
Unmapped reads:                         0
mapq < mapq_cut (non-unique):           2998143

mapq >= mapq_cut (unique):              109319444
Read-1:                                 54663285
Read-2:                                 54656159
Reads map to '+':                       54659482
Reads map to '-':                       54659962
Non-splice reads:                       83997232
Splice reads:                           25322212
Reads mapped in proper pairs:           109282932
Proper-paired reads map to different chrom:0