Sample Total Reads Total Passed QC Mapped Secondary Alignments Duplicates Paired in Sequencing Properly Paired Self and mate mapped Singletons Mate mapped to diff chr Diff chr (mapQ >= 5) DE-1 196.872006 196.872006 196.872006 22.275686999999998 0.0 174.596319 174.517148 174.517148 0.07917099999999999 0.0 0.0 DE-2 181.107831 181.107831 181.107831 14.99151 48.06565 166.116321 166.03555799999998 166.03555799999998 0.080763 0.0 0.0 DE-3 179.03682999999998 179.03682999999998 179.03682999999998 17.417642 0.0 161.61918799999998 161.53502 161.53502 0.08416799999999999 0.0 0.0 DE-3C 176.63395 176.63395 176.63395 18.942346999999998 0.0 157.691603 157.62230399999999 157.62230399999999 0.069299 0.0 0.0 DE-4 208.58624799999998 208.58624799999998 208.58624799999998 20.710656 0.0 187.87559199999998 187.791504 187.791504 0.084088 0.0 0.0 DE-5 179.29900899999998 179.29900899999998 179.29900899999998 20.290672 53.383226 159.00833699999998 158.926876 158.926876 0.08146099999999999 0.0 0.0 DE-6 203.249203 203.249203 203.249203 25.152376 65.753678 178.096827 178.002364 178.002364 0.09446299999999999 0.0 0.0 DE-7 153.73463099999998 153.73463099999998 153.73463099999998 16.575291 42.837500999999996 137.15934 137.098864 137.098864 0.060475999999999995 0.0 0.0 HB 171.984511 171.984511 171.984511 21.268179 51.392216 150.716332 150.63812 150.63812 0.07821199999999999 0.0 0.0