[cheesy_carlsson] Nextflow Workflow Report

task_id	process	tag	status	hash	allocated cpus	%cpu	allocated memory	%mem	vmem	rss	peak_vmem	peak_rss	allocated time	duration	realtime	script	exit	submit	start	complete	rchar	wchar	syscr	syscw	read_bytes	write_bytes	native_id	name	module	container	disk	attempt	scratch	workdir

task_id	process	tag	status	hash	allocated cpus	%cpu	allocated memory	%mem	vmem	rss	peak_vmem	peak_rss	allocated time	duration	realtime	script	submit	start	complete	rchar	wchar	syscr	syscw	read_bytes	write_bytes	native_id	name	module	container	disk	attempt	scratch	workdir
130	map_parse_sort_chunks	library:day00_ESC_rep1 run:lane1 chunk:0	COMPLETED	`66/c55836`	8	780.4	-	2.0	47.858 GB	10.135 GB	50.825 GB	10.187 GB	-	1d 3h	1d 3h	`TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) touch day00_ESC_rep1.lane1.hg38.0.bam bwa mem -t 8 -SP GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna SRR7506533_1.fastq.gz SRR7506533_2.fastq.gz \| pairtools parse --drop-sam --drop-readid --add-columns mapq --walks-policy mask -c GRCh38_01_primary.chrom.sizes \| pairtools sort --nproc 8 -o day00_ESC_rep1.lane1.hg38.0.pairsam.gz --tmpdir $TASK_TMP_DIR \| cat rm -rf $TASK_TMP_DIR`	2024-03-05T20:05:55+00:00	2024-03-05T20:05:55+00:00	2024-03-07T00:04:47+00:00	1.377 TB	1.201 TB	234.970 MB	264.610 MB	200.395 GB	40.099 GB	730529	map_parse_sort_chunks (library:day00_ESC_rep1 run:lane1 chunk:0)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/66/c558363e7de5f4805aa494d67a7c77`
157	map_parse_sort_chunks	library:day05_cardiacMesoderm_rep2 run:lane2 chunk:0	COMPLETED	`b6/72f957`	8	786.2	-	1.9	47.546 GB	9.735 GB	50.637 GB	9.743 GB	-	5h 9m	5h 9m	`TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) touch day05_cardiacMesoderm_rep2.lane2.hg38.0.bam bwa mem -t 8 -SP GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna SRR7620397_1.fastq.gz SRR7620397_2.fastq.gz \| pairtools parse --drop-sam --drop-readid --add-columns mapq --walks-policy mask -c GRCh38_01_primary.chrom.sizes \| pairtools sort --nproc 8 -o day05_cardiacMesoderm_rep2.lane2.hg38.0.pairsam.gz --tmpdir $TASK_TMP_DIR \| cat rm -rf $TASK_TMP_DIR`	2024-03-05T20:05:55+00:00	2024-03-05T20:05:55+00:00	2024-03-06T01:15:23+00:00	260.732 GB	225.165 GB	42.861 MB	48.528 MB	34.955 GB	7.415 GB	730560	map_parse_sort_chunks (library:day05_cardiacMesoderm_rep2 run:lane2 chunk:0)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/b6/72f95724cc6792d8724a3408e29194`
168	map_parse_sort_chunks	library:day07_cardiacProgenitor_rep1 run:lane5 chunk:0	COMPLETED	`76/be6c74`	8	786.1	-	1.9	47.760 GB	9.890 GB	50.825 GB	9.899 GB	-	5h 4m	5h 4m	`TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) touch day07_cardiacProgenitor_rep1.lane5.hg38.0.bam bwa mem -t 8 -SP GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna SRR7620830_1.fastq.gz SRR7620830_2.fastq.gz \| pairtools parse --drop-sam --drop-readid --add-columns mapq --walks-policy mask -c GRCh38_01_primary.chrom.sizes \| pairtools sort --nproc 8 -o day07_cardiacProgenitor_rep1.lane5.hg38.0.pairsam.gz --tmpdir $TASK_TMP_DIR \| cat rm -rf $TASK_TMP_DIR`	2024-03-05T20:05:55+00:00	2024-03-05T20:05:55+00:00	2024-03-06T01:10:18+00:00	249.358 GB	215.276 GB	40.923 MB	46.322 MB	28.389 GB	7.204 GB	730546	map_parse_sort_chunks (library:day07_cardiacProgenitor_rep1 run:lane5 chunk:0)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/76/be6c74f182ea6564f565275e764df3`
172	map_parse_sort_chunks	library:day07_cardiacProgenitor_rep2 run:lane1 chunk:0	COMPLETED	`fc/82d1fb`	8	786.4	-	1.9	47.546 GB	9.705 GB	50.512 GB	9.715 GB	-	4h 53m	4h 53m	`TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) touch day07_cardiacProgenitor_rep2.lane1.hg38.0.bam bwa mem -t 8 -SP GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna SRR7506540_1.fastq.gz SRR7506540_2.fastq.gz \| pairtools parse --drop-sam --drop-readid --add-columns mapq --walks-policy mask -c GRCh38_01_primary.chrom.sizes \| pairtools sort --nproc 8 -o day07_cardiacProgenitor_rep2.lane1.hg38.0.pairsam.gz --tmpdir $TASK_TMP_DIR \| cat rm -rf $TASK_TMP_DIR`	2024-03-05T20:05:55+00:00	2024-03-05T20:05:55+00:00	2024-03-06T00:59:14+00:00	241.676 GB	208.648 GB	39.616 MB	44.829 MB	26.401 GB	6.996 GB	730584	map_parse_sort_chunks (library:day07_cardiacProgenitor_rep2 run:lane1 chunk:0)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/fc/82d1fb03eaa1c31e5d2330594d8b86`
196	map_parse_sort_chunks	library:day80_ventricularCardiomyocyte_rep1 run:lane1 chunk:0	COMPLETED	`67/50f39e`	8	781.4	-	2.0	48.358 GB	10.294 GB	51.325 GB	10.320 GB	-	1d 7h	1d 7h	`TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) touch day80_ventricularCardiomyocyte_rep1.lane1.hg38.0.bam bwa mem -t 8 -SP GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna SRR7506543_1.fastq.gz SRR7506543_2.fastq.gz \| pairtools parse --drop-sam --drop-readid --add-columns mapq --walks-policy mask -c GRCh38_01_primary.chrom.sizes \| pairtools sort --nproc 8 -o day80_ventricularCardiomyocyte_rep1.lane1.hg38.0.pairsam.gz --tmpdir $TASK_TMP_DIR \| cat rm -rf $TASK_TMP_DIR`	2024-03-05T20:05:55+00:00	2024-03-05T20:05:55+00:00	2024-03-07T03:20:31+00:00	1.557 TB	1.366 TB	265.806 MB	300.431 MB	217.575 GB	45.948 GB	730620	map_parse_sort_chunks (library:day80_ventricularCardiomyocyte_rep1 run:lane1 chunk:0)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/67/50f39e1efa2472811754af3bc8093e`
226	merge_dedup_splitbam	library:day00_ESC_rep2	COMPLETED	`e2/d3d635`	4	129.2	-	0.4	41.083 GB	2.316 GB	43.974 GB	2.351 GB	-	2h 24m	2h 24m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day00_ESC_rep2.lane7.hg38.0.pairsam.gz day00_ESC_rep2.lane2.hg38.0.pairsam.gz day00_ESC_rep2.lane4.hg38.0.pairsam.gz day00_ESC_rep2.lane6.hg38.0.pairsam.gz day00_ESC_rep2.lane5.hg38.0.pairsam.gz day00_ESC_rep2.lane8.hg38.0.pairsam.gz day00_ESC_rep2.lane1.hg38.0.pairsam.gz day00_ESC_rep2.lane3.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day00_ESC_rep2.hg38.nodups.pairs.gz --output-unmapped day00_ESC_rep2.hg38.unmapped.pairs.gz --output-dups day00_ESC_rep2.hg38.dups.pairs.gz --output-stats day00_ESC_rep2.hg38.dedup.stats \| cat touch day00_ESC_rep2.hg38.unmapped.bam touch day00_ESC_rep2.hg38.nodups.bam touch day00_ESC_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day00_ESC_rep2.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:45:10+00:00	293.056 GB	282.915 GB	66.953 MB	43.476 MB	13.014 GB	12.131 GB	1256944	merge_dedup_splitbam (library:day00_ESC_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/e2/d3d63511a6da6f4d8742124d172d33`
227	merge_dedup_splitbam	library:day07_cardiacProgenitor_rep2	COMPLETED	`63/53606a`	4	129.3	-	0.4	41.105 GB	2.331 GB	44.099 GB	2.371 GB	-	2h 9m	2h 9m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day07_cardiacProgenitor_rep2.lane4.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane7.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane5.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane6.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane8.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane2.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane3.hg38.0.pairsam.gz day07_cardiacProgenitor_rep2.lane1.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day07_cardiacProgenitor_rep2.hg38.nodups.pairs.gz --output-unmapped day07_cardiacProgenitor_rep2.hg38.unmapped.pairs.gz --output-dups day07_cardiacProgenitor_rep2.hg38.dups.pairs.gz --output-stats day07_cardiacProgenitor_rep2.hg38.dedup.stats \| cat touch day07_cardiacProgenitor_rep2.hg38.unmapped.bam touch day07_cardiacProgenitor_rep2.hg38.nodups.bam touch day07_cardiacProgenitor_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day07_cardiacProgenitor_rep2.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:30:28+00:00	261.944 GB	252.527 GB	59.805 MB	38.758 MB	20.517 GB	11.151 GB	1257047	merge_dedup_splitbam (library:day07_cardiacProgenitor_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/63/53606ab3e2ddebf7b1f18300325950`
228	merge_dedup_splitbam	library:day02_mesoderm_rep2	COMPLETED	`fc/3f2fbf`	4	129.3	-	0.4	41.095 GB	2.337 GB	43.974 GB	2.363 GB	-	2h 15m	2h 15m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day02_mesoderm_rep2.lane8.hg38.0.pairsam.gz day02_mesoderm_rep2.lane3.hg38.0.pairsam.gz day02_mesoderm_rep2.lane2.hg38.0.pairsam.gz day02_mesoderm_rep2.lane5.hg38.0.pairsam.gz day02_mesoderm_rep2.lane7.hg38.0.pairsam.gz day02_mesoderm_rep2.lane6.hg38.0.pairsam.gz day02_mesoderm_rep2.lane4.hg38.0.pairsam.gz day02_mesoderm_rep2.lane1.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day02_mesoderm_rep2.hg38.nodups.pairs.gz --output-unmapped day02_mesoderm_rep2.hg38.unmapped.pairs.gz --output-dups day02_mesoderm_rep2.hg38.dups.pairs.gz --output-stats day02_mesoderm_rep2.hg38.dedup.stats \| cat touch day02_mesoderm_rep2.hg38.unmapped.bam touch day02_mesoderm_rep2.hg38.nodups.bam touch day02_mesoderm_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day02_mesoderm_rep2.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:35:45+00:00	272.663 GB	263.150 GB	61.832 MB	40.402 MB	20.993 GB	11.532 GB	1256997	merge_dedup_splitbam (library:day02_mesoderm_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/fc/3f2fbf42b4e87f0e0b7ead798faa96`
229	merge_dedup_splitbam	library:day80_ventricularCardiomyocyte_rep2	COMPLETED	`bc/be4bc6`	4	129.5	-	0.4	41.088 GB	2.333 GB	44.161 GB	2.359 GB	-	1h 48m	1h 48m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day80_ventricularCardiomyocyte_rep2.lane5.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane7.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane8.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane1.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane3.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane2.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane6.hg38.0.pairsam.gz day80_ventricularCardiomyocyte_rep2.lane4.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day80_ventricularCardiomyocyte_rep2.hg38.nodups.pairs.gz --output-unmapped day80_ventricularCardiomyocyte_rep2.hg38.unmapped.pairs.gz --output-dups day80_ventricularCardiomyocyte_rep2.hg38.dups.pairs.gz --output-stats day80_ventricularCardiomyocyte_rep2.hg38.dedup.stats \| cat touch day80_ventricularCardiomyocyte_rep2.hg38.unmapped.bam touch day80_ventricularCardiomyocyte_rep2.hg38.nodups.bam touch day80_ventricularCardiomyocyte_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day80_ventricularCardiomyocyte_rep2.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:09:28+00:00	219.616 GB	211.940 GB	49.740 MB	32.515 MB	10.059 GB	9.453 GB	1257105	merge_dedup_splitbam (library:day80_ventricularCardiomyocyte_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/bc/be4bc602a23bf9b92f4f4441c8975b`
230	merge_dedup_splitbam	library:day05_cardiacMesoderm_rep2	COMPLETED	`e5/c0a6a2`	4	129.5	-	0.4	41.122 GB	2.348 GB	44.036 GB	2.515 GB	-	2h 30m	2h 30m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day05_cardiacMesoderm_rep2.lane5.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane7.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane3.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane6.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane4.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane1.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane8.hg38.0.pairsam.gz day05_cardiacMesoderm_rep2.lane2.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day05_cardiacMesoderm_rep2.hg38.nodups.pairs.gz --output-unmapped day05_cardiacMesoderm_rep2.hg38.unmapped.pairs.gz --output-dups day05_cardiacMesoderm_rep2.hg38.dups.pairs.gz --output-stats day05_cardiacMesoderm_rep2.hg38.dedup.stats \| cat touch day05_cardiacMesoderm_rep2.hg38.unmapped.bam touch day05_cardiacMesoderm_rep2.hg38.nodups.bam touch day05_cardiacMesoderm_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day05_cardiacMesoderm_rep2.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:50:46+00:00	304.739 GB	294.224 GB	69.196 MB	45.179 MB	13.731 GB	12.856 GB	1256966	merge_dedup_splitbam (library:day05_cardiacMesoderm_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/e5/c0a6a203708f2920c29896a3a36556`
231	merge_dedup_splitbam	library:day05_cardiacMesoderm_rep1	COMPLETED	`b9/c12e29`	4	129.5	-	0.4	41.086 GB	2.316 GB	44.036 GB	2.423 GB	-	2h 4m	2h 4m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day05_cardiacMesoderm_rep1.lane2.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane4.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane6.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane5.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane7.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane3.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane1.hg38.0.pairsam.gz day05_cardiacMesoderm_rep1.lane8.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day05_cardiacMesoderm_rep1.hg38.nodups.pairs.gz --output-unmapped day05_cardiacMesoderm_rep1.hg38.unmapped.pairs.gz --output-dups day05_cardiacMesoderm_rep1.hg38.dups.pairs.gz --output-stats day05_cardiacMesoderm_rep1.hg38.dedup.stats \| cat touch day05_cardiacMesoderm_rep1.hg38.unmapped.bam touch day05_cardiacMesoderm_rep1.hg38.nodups.bam touch day05_cardiacMesoderm_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day05_cardiacMesoderm_rep1.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:25:20+00:00	252.719 GB	243.571 GB	57.545 MB	37.369 MB	11.622 GB	10.855 GB	1257071	merge_dedup_splitbam (library:day05_cardiacMesoderm_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/b9/c12e291706cb12a1b6cf42e8f2eae0`
232	merge_dedup_splitbam	library:day15_primativeCardiomyocyte_rep1	COMPLETED	`33/5db9b6`	4	130.7	-	0.4	41.080 GB	2.359 GB	43.974 GB	2.395 GB	-	1h 18m	1h 18m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day15_primativeCardiomyocyte_rep1.lane8.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane3.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane1.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane5.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane6.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane7.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane2.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep1.lane4.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day15_primativeCardiomyocyte_rep1.hg38.nodups.pairs.gz --output-unmapped day15_primativeCardiomyocyte_rep1.hg38.unmapped.pairs.gz --output-dups day15_primativeCardiomyocyte_rep1.hg38.dups.pairs.gz --output-stats day15_primativeCardiomyocyte_rep1.hg38.dedup.stats \| cat touch day15_primativeCardiomyocyte_rep1.hg38.unmapped.bam touch day15_primativeCardiomyocyte_rep1.hg38.nodups.bam touch day15_primativeCardiomyocyte_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day15_primativeCardiomyocyte_rep1.hg38.nodups.pairs.gz	2024-03-07T04:53:05+00:00	2024-03-07T04:53:05+00:00	2024-03-07T06:11:45+00:00	160.736 GB	154.677 GB	36.919 MB	23.716 MB	7.442 GB	6.987 GB	3366930	merge_dedup_splitbam (library:day15_primativeCardiomyocyte_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/33/5db9b66172844502df8086c51ef68f`
233	merge_dedup_splitbam	library:day07_cardiacProgenitor_rep1	COMPLETED	`10/ffac8b`	4	129.5	-	0.4	41.096 GB	2.329 GB	44.161 GB	2.357 GB	-	2h 0m	2h 0m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day07_cardiacProgenitor_rep1.lane4.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane6.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane1.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane2.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane3.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane7.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane8.hg38.0.pairsam.gz day07_cardiacProgenitor_rep1.lane5.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day07_cardiacProgenitor_rep1.hg38.nodups.pairs.gz --output-unmapped day07_cardiacProgenitor_rep1.hg38.unmapped.pairs.gz --output-dups day07_cardiacProgenitor_rep1.hg38.dups.pairs.gz --output-stats day07_cardiacProgenitor_rep1.hg38.dedup.stats \| cat touch day07_cardiacProgenitor_rep1.hg38.unmapped.bam touch day07_cardiacProgenitor_rep1.hg38.nodups.bam touch day07_cardiacProgenitor_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day07_cardiacProgenitor_rep1.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:20:59+00:00	243.546 GB	234.688 GB	55.568 MB	36.000 MB	11.175 GB	10.498 GB	1257017	merge_dedup_splitbam (library:day07_cardiacProgenitor_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/10/ffac8b2fb3c04c820f25dc72382479`
234	merge_dedup_splitbam	library:day15_primativeCardiomyocyte_rep2	COMPLETED	`1b/a3a59c`	4	129.3	-	0.4	41.111 GB	2.406 GB	44.036 GB	2.442 GB	-	2h 21m	2h 21m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) pairtools merge day15_primativeCardiomyocyte_rep2.lane8.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane1.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane5.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane3.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane7.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane4.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane6.hg38.0.pairsam.gz day15_primativeCardiomyocyte_rep2.lane2.hg38.0.pairsam.gz --nproc 4 --tmpdir $TASK_TMP_DIR \| pairtools dedup --max-mismatch 1 --mark-dups --output day15_primativeCardiomyocyte_rep2.hg38.nodups.pairs.gz --output-unmapped day15_primativeCardiomyocyte_rep2.hg38.unmapped.pairs.gz --output-dups day15_primativeCardiomyocyte_rep2.hg38.dups.pairs.gz --output-stats day15_primativeCardiomyocyte_rep2.hg38.dedup.stats \| cat touch day15_primativeCardiomyocyte_rep2.hg38.unmapped.bam touch day15_primativeCardiomyocyte_rep2.hg38.nodups.bam touch day15_primativeCardiomyocyte_rep2.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day15_primativeCardiomyocyte_rep2.hg38.nodups.pairs.gz	2024-03-07T05:04:42+00:00	2024-03-07T05:04:42+00:00	2024-03-07T07:26:29+00:00	276.927 GB	267.515 GB	62.945 MB	41.106 MB	12.868 GB	11.500 GB	3648980	merge_dedup_splitbam (library:day15_primativeCardiomyocyte_rep2)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/1b/a3a59cefedaf503c74e1b970549467`
235	merge_dedup_splitbam	library:day02_mesoderm_rep1	COMPLETED	`7c/45ee1e`	4	129.1	-	0.3	20.825 GB	1.405 GB	22.240 GB	1.405 GB	-	1h 50m	1h 50m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) bgzip -cd -@ 3 day02_mesoderm_rep1.lane1.hg38.0.pairsam.gz \| pairtools dedup --max-mismatch 1 --mark-dups --output day02_mesoderm_rep1.hg38.nodups.pairs.gz --output-unmapped day02_mesoderm_rep1.hg38.unmapped.pairs.gz --output-dups day02_mesoderm_rep1.hg38.dups.pairs.gz --output-stats day02_mesoderm_rep1.hg38.dedup.stats \| cat touch day02_mesoderm_rep1.hg38.unmapped.bam touch day02_mesoderm_rep1.hg38.nodups.bam touch day02_mesoderm_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day02_mesoderm_rep1.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:10:54+00:00	134.822 GB	127.245 GB	18.964 MB	8.299 MB	9.959 GB	10.564 GB	1256845	merge_dedup_splitbam (library:day02_mesoderm_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/7c/45ee1e3a5439be0380427386a5cb6a`
236	merge_dedup_splitbam	library:day00_ESC_rep1	COMPLETED	`61/c1efac`	4	129.4	-	0.2	20.797 GB	1.180 GB	22.365 GB	1.180 GB	-	1h 32m	1h 32m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) bgzip -cd -@ 3 day00_ESC_rep1.lane1.hg38.0.pairsam.gz \| pairtools dedup --max-mismatch 1 --mark-dups --output day00_ESC_rep1.hg38.nodups.pairs.gz --output-unmapped day00_ESC_rep1.hg38.unmapped.pairs.gz --output-dups day00_ESC_rep1.hg38.dups.pairs.gz --output-stats day00_ESC_rep1.hg38.dedup.stats \| cat touch day00_ESC_rep1.hg38.unmapped.bam touch day00_ESC_rep1.hg38.nodups.bam touch day00_ESC_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day00_ESC_rep1.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T04:53:05+00:00	113.658 GB	106.965 GB	16.142 MB	6.971 MB	8.603 GB	8.957 GB	1256853	merge_dedup_splitbam (library:day00_ESC_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/61/c1efac7baef4284fbb2f6cea568449`
237	merge_dedup_splitbam	library:day80_ventricularCardiomyocyte_rep1	COMPLETED	`8b/80066e`	4	129.4	-	0.3	20.797 GB	1.438 GB	22.303 GB	1.438 GB	-	1h 44m	1h 44m	TASK_TMP_DIR=$(mktemp -d -p ./ distiller.tmp.XXXXXXXXXX) bgzip -cd -@ 3 day80_ventricularCardiomyocyte_rep1.lane1.hg38.0.pairsam.gz \| pairtools dedup --max-mismatch 1 --mark-dups --output day80_ventricularCardiomyocyte_rep1.hg38.nodups.pairs.gz --output-unmapped day80_ventricularCardiomyocyte_rep1.hg38.unmapped.pairs.gz --output-dups day80_ventricularCardiomyocyte_rep1.hg38.dups.pairs.gz --output-stats day80_ventricularCardiomyocyte_rep1.hg38.dedup.stats \| cat touch day80_ventricularCardiomyocyte_rep1.hg38.unmapped.bam touch day80_ventricularCardiomyocyte_rep1.hg38.nodups.bam touch day80_ventricularCardiomyocyte_rep1.hg38.dups.bam rm -rf $TASK_TMP_DIR pairix day80_ventricularCardiomyocyte_rep1.hg38.nodups.pairs.gz	2024-03-07T03:20:31+00:00	2024-03-07T03:20:31+00:00	2024-03-07T05:04:42+00:00	128.084 GB	121.506 GB	17.311 MB	7.916 MB	9.328 GB	10.251 GB	1256864	merge_dedup_splitbam (library:day80_ventricularCardiomyocyte_rep1)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/8b/80066ee3f4da48b2d6f10f444b1bc6`
238	bin_zoom_library_pairs	library:day00_ESC_rep1 filter:no_filter	COMPLETED	`f8/d6da22`	8	393.6	-	3.6	180.098 GB	18.355 GB	192.739 GB	30.008 GB	-	3h 0m	3h 0m	`bgzip -cd -@ 3 day00_ESC_rep1.hg38.nodups.pairs.gz \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day00_ESC_rep1.hg38.no_filter.100.cool cooler zoomify --nproc 8 --out day00_ESC_rep1.hg38.no_filter.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day00_ESC_rep1.hg38.no_filter.100.cool`	2024-03-07T05:10:54+00:00	2024-03-07T05:10:54+00:00	2024-03-07T08:11:19+00:00	2.881 TB	2.479 TB	160.590 MB	2.839 MB	432.519 GB	10.962 GB	3802913	bin_zoom_library_pairs (library:day00_ESC_rep1 filter:no_filter)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/f8/d6da22cc3796edb51b48d912724078`
239	bin_zoom_library_pairs	library:day00_ESC_rep1 filter:mapq_30	COMPLETED	`8f/3af340`	8	380.0	-	3.4	180.151 GB	17.362 GB	192.758 GB	29.998 GB	-	3h 6m	3h 6m	`bgzip -cd -@ 3 day00_ESC_rep1.hg38.nodups.pairs.gz \| pairtools select '(mapq1>=30) and (mapq2>=30)' \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day00_ESC_rep1.hg38.mapq_30.100.cool cooler zoomify --nproc 8 --out day00_ESC_rep1.hg38.mapq_30.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day00_ESC_rep1.hg38.mapq_30.100.cool`	2024-03-07T05:25:20+00:00	2024-03-07T05:25:20+00:00	2024-03-07T08:32:09+00:00	2.754 TB	2.377 TB	158.839 MB	6.659 MB	399.528 GB	10.044 GB	4038769	bin_zoom_library_pairs (library:day00_ESC_rep1 filter:mapq_30)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/8f/3af34089b463cea41a68939da8c8b6`
240	bin_zoom_library_pairs	library:day80_ventricularCardiomyocyte_rep1 filter:no_filter	COMPLETED	`97/72a7cd`	8	377.7	-	3.7	181.230 GB	18.678 GB	192.865 GB	30.594 GB	-	2h 44m	2h 44m	`bgzip -cd -@ 3 day80_ventricularCardiomyocyte_rep1.hg38.nodups.pairs.gz \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day80_ventricularCardiomyocyte_rep1.hg38.no_filter.100.cool cooler zoomify --nproc 8 --out day80_ventricularCardiomyocyte_rep1.hg38.no_filter.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day80_ventricularCardiomyocyte_rep1.hg38.no_filter.100.cool`	2024-03-07T05:50:46+00:00	2024-03-07T05:50:46+00:00	2024-03-07T08:35:28+00:00	2.226 TB	1.882 TB	135.845 MB	3.209 MB	368.513 GB	12.785 GB	53824	bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep1 filter:no_filter)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/97/72a7cd0fa417b4ae7ca964912ff036`
241	bin_zoom_library_pairs	library:day80_ventricularCardiomyocyte_rep1 filter:mapq_30	COMPLETED	`97/9cc9d1`	8	359.9	-	3.5	181.467 GB	17.870 GB	192.926 GB	30.160 GB	-	2h 46m	2h 46m	bgzip -cd -@ 3 day80_ventricularCardiomyocyte_rep1.hg38.nodups.pairs.gz \| pairtools select '(mapq1>=30) and (mapq2>=30)' \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day80_ventricularCardiomyocyte_rep1.hg38.mapq_30.100.cool cooler zoomify --nproc 8 --out day80_ventricularCardiomyocyte_rep1.hg38.mapq_30.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day80_ventricularCardiomyocyte_rep1.hg38.mapq_30.100.cool	2024-03-07T05:35:45+00:00	2024-03-07T05:35:45+00:00	2024-03-07T08:22:12+00:00	2.069 TB	1.756 TB	130.724 MB	7.073 MB	342.383 GB	11.712 GB	4144319	bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep1 filter:mapq_30)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/97/9cc9d1ce9cb54bad7dc71b5072db68`
242	bin_zoom_library_pairs	library:day80_ventricularCardiomyocyte_rep2 filter:no_filter	COMPLETED	`ef/817575`	8	371.5	-	3.5	179.393 GB	17.734 GB	192.889 GB	30.165 GB	-	2h 33m	2h 33m	`bgzip -cd -@ 3 day80_ventricularCardiomyocyte_rep2.hg38.nodups.pairs.gz \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day80_ventricularCardiomyocyte_rep2.hg38.no_filter.100.cool cooler zoomify --nproc 8 --out day80_ventricularCardiomyocyte_rep2.hg38.no_filter.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day80_ventricularCardiomyocyte_rep2.hg38.no_filter.100.cool`	2024-03-07T08:11:19+00:00	2024-03-07T08:11:19+00:00	2024-03-07T10:44:33+00:00	2.006 TB	1.688 TB	124.998 MB	3.056 MB	338.990 GB	12.251 GB	547805	bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep2 filter:no_filter)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/ef/8175758d86fc7ec18ef3cff8ffdb32`
243	bin_zoom_library_pairs	library:day80_ventricularCardiomyocyte_rep2 filter:mapq_30	COMPLETED	`18/44190a`	8	341.2	-	5.0	182.384 GB	25.072 GB	192.870 GB	30.167 GB	-	2h 31m	2h 31m	bgzip -cd -@ 3 day80_ventricularCardiomyocyte_rep2.hg38.nodups.pairs.gz \| pairtools select '(mapq1>=30) and (mapq2>=30)' \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day80_ventricularCardiomyocyte_rep2.hg38.mapq_30.100.cool cooler zoomify --nproc 8 --out day80_ventricularCardiomyocyte_rep2.hg38.mapq_30.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day80_ventricularCardiomyocyte_rep2.hg38.mapq_30.100.cool	2024-03-07T07:26:29+00:00	2024-03-07T07:26:29+00:00	2024-03-07T09:58:28+00:00	1.897 TB	1.604 TB	121.453 MB	6.660 MB	316.036 GB	11.252 GB	431944	bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep2 filter:mapq_30)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/18/44190a43e1eb673e62b51a432a259d`
244	bin_zoom_library_pairs	library:day02_mesoderm_rep1 filter:no_filter	COMPLETED	`f0/bc9a39`	8	404.8	-	4.1	181.906 GB	20.525 GB	192.712 GB	34.092 GB	-	3h 32m	3h 32m	`bgzip -cd -@ 3 day02_mesoderm_rep1.hg38.nodups.pairs.gz \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day02_mesoderm_rep1.hg38.no_filter.100.cool cooler zoomify --nproc 8 --out day02_mesoderm_rep1.hg38.no_filter.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day02_mesoderm_rep1.hg38.no_filter.100.cool`	2024-03-07T08:22:12+00:00	2024-03-07T08:22:12+00:00	2024-03-07T11:54:25+00:00	3.337 TB	2.852 TB	194.618 MB	3.297 MB	522.437 GB	12.649 GB	578733	bin_zoom_library_pairs (library:day02_mesoderm_rep1 filter:no_filter)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/f0/bc9a3979ad763b2156161e9f2d32f3`
245	bin_zoom_library_pairs	library:day02_mesoderm_rep1 filter:mapq_30	COMPLETED	`87/0cecd1`	8	378.8	-	3.8	182.585 GB	19.312 GB	192.718 GB	31.824 GB	-	3h 42m	3h 42m	`bgzip -cd -@ 3 day02_mesoderm_rep1.hg38.nodups.pairs.gz \| pairtools select '(mapq1>=30) and (mapq2>=30)' \| cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly hg38 GRCh38_01_primary.chrom.sizes:100 - day02_mesoderm_rep1.hg38.mapq_30.100.cool cooler zoomify --nproc 8 --out day02_mesoderm_rep1.hg38.mapq_30.100.mcool --resolutions 10000000,5000000,2500000,1000000,500000,250000,100000,50000,25000,10000,5000,2000,1000,500,100 --balance day02_mesoderm_rep1.hg38.mapq_30.100.cool`	2024-03-07T08:32:09+00:00	2024-03-07T08:32:09+00:00	2024-03-07T12:15:05+00:00	3.154 TB	2.711 TB	197.186 MB	7.751 MB	470.092 GB	11.607 GB	606387	bin_zoom_library_pairs (library:day02_mesoderm_rep1 filter:mapq_30)	-	`open2c/distiller_env:0.3.4`	-	1	`-`	`/net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/87/0cecd1819cb2413964a53b36370d62`

Nextflow workflow report

`[cheesy_carlsson]`

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Tasks