nextflow run distiller.nf -params-file cardiac-distiller-project.yml
6d62f5b10ec044e382c9ce12f4507468
a9e03197-ab28-4768-a095-5b04b4d47351
These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|
task_id | process | tag | status | hash | allocated cpus | %cpu | allocated memory | %mem | vmem | rss | peak_vmem | peak_rss | allocated time | duration | realtime | script | exit | submit | start | complete | rchar | wchar | syscr | syscw | read_bytes | write_bytes | native_id | name | module | container | disk | attempt | scratch | workdir |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
130 | map_parse_sort_chunks | library:day00_ESC_rep1 run:lane1 chunk:0 | COMPLETED | 66/c55836 | 8 | 780.4 | - | 2.0 | 47.858 GB | 10.135 GB | 50.825 GB | 10.187 GB | - | 1d 3h | 1d 3h |
| 0 | 2024-03-05T20:05:55+00:00 | 2024-03-05T20:05:55+00:00 | 2024-03-07T00:04:47+00:00 | 1.377 TB | 1.201 TB | 234.970 MB | 264.610 MB | 200.395 GB | 40.099 GB | 730529 | map_parse_sort_chunks (library:day00_ESC_rep1 run:lane1 chunk:0) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/66/c558363e7de5f4805aa494d67a7c77 |
157 | map_parse_sort_chunks | library:day05_cardiacMesoderm_rep2 run:lane2 chunk:0 | COMPLETED | b6/72f957 | 8 | 786.2 | - | 1.9 | 47.546 GB | 9.735 GB | 50.637 GB | 9.743 GB | - | 5h 9m | 5h 9m |
| 0 | 2024-03-05T20:05:55+00:00 | 2024-03-05T20:05:55+00:00 | 2024-03-06T01:15:23+00:00 | 260.732 GB | 225.165 GB | 42.861 MB | 48.528 MB | 34.955 GB | 7.415 GB | 730560 | map_parse_sort_chunks (library:day05_cardiacMesoderm_rep2 run:lane2 chunk:0) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/b6/72f95724cc6792d8724a3408e29194 |
168 | map_parse_sort_chunks | library:day07_cardiacProgenitor_rep1 run:lane5 chunk:0 | COMPLETED | 76/be6c74 | 8 | 786.1 | - | 1.9 | 47.760 GB | 9.890 GB | 50.825 GB | 9.899 GB | - | 5h 4m | 5h 4m |
| 0 | 2024-03-05T20:05:55+00:00 | 2024-03-05T20:05:55+00:00 | 2024-03-06T01:10:18+00:00 | 249.358 GB | 215.276 GB | 40.923 MB | 46.322 MB | 28.389 GB | 7.204 GB | 730546 | map_parse_sort_chunks (library:day07_cardiacProgenitor_rep1 run:lane5 chunk:0) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/76/be6c74f182ea6564f565275e764df3 |
172 | map_parse_sort_chunks | library:day07_cardiacProgenitor_rep2 run:lane1 chunk:0 | COMPLETED | fc/82d1fb | 8 | 786.4 | - | 1.9 | 47.546 GB | 9.705 GB | 50.512 GB | 9.715 GB | - | 4h 53m | 4h 53m |
| 0 | 2024-03-05T20:05:55+00:00 | 2024-03-05T20:05:55+00:00 | 2024-03-06T00:59:14+00:00 | 241.676 GB | 208.648 GB | 39.616 MB | 44.829 MB | 26.401 GB | 6.996 GB | 730584 | map_parse_sort_chunks (library:day07_cardiacProgenitor_rep2 run:lane1 chunk:0) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/fc/82d1fb03eaa1c31e5d2330594d8b86 |
196 | map_parse_sort_chunks | library:day80_ventricularCardiomyocyte_rep1 run:lane1 chunk:0 | COMPLETED | 67/50f39e | 8 | 781.4 | - | 2.0 | 48.358 GB | 10.294 GB | 51.325 GB | 10.320 GB | - | 1d 7h | 1d 7h |
| 0 | 2024-03-05T20:05:55+00:00 | 2024-03-05T20:05:55+00:00 | 2024-03-07T03:20:31+00:00 | 1.557 TB | 1.366 TB | 265.806 MB | 300.431 MB | 217.575 GB | 45.948 GB | 730620 | map_parse_sort_chunks (library:day80_ventricularCardiomyocyte_rep1 run:lane1 chunk:0) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/67/50f39e1efa2472811754af3bc8093e |
226 | merge_dedup_splitbam | library:day00_ESC_rep2 | COMPLETED | e2/d3d635 | 4 | 129.2 | - | 0.4 | 41.083 GB | 2.316 GB | 43.974 GB | 2.351 GB | - | 2h 24m | 2h 24m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:45:10+00:00 | 293.056 GB | 282.915 GB | 66.953 MB | 43.476 MB | 13.014 GB | 12.131 GB | 1256944 | merge_dedup_splitbam (library:day00_ESC_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/e2/d3d63511a6da6f4d8742124d172d33 |
227 | merge_dedup_splitbam | library:day07_cardiacProgenitor_rep2 | COMPLETED | 63/53606a | 4 | 129.3 | - | 0.4 | 41.105 GB | 2.331 GB | 44.099 GB | 2.371 GB | - | 2h 9m | 2h 9m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:30:28+00:00 | 261.944 GB | 252.527 GB | 59.805 MB | 38.758 MB | 20.517 GB | 11.151 GB | 1257047 | merge_dedup_splitbam (library:day07_cardiacProgenitor_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/63/53606ab3e2ddebf7b1f18300325950 |
228 | merge_dedup_splitbam | library:day02_mesoderm_rep2 | COMPLETED | fc/3f2fbf | 4 | 129.3 | - | 0.4 | 41.095 GB | 2.337 GB | 43.974 GB | 2.363 GB | - | 2h 15m | 2h 15m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:35:45+00:00 | 272.663 GB | 263.150 GB | 61.832 MB | 40.402 MB | 20.993 GB | 11.532 GB | 1256997 | merge_dedup_splitbam (library:day02_mesoderm_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/fc/3f2fbf42b4e87f0e0b7ead798faa96 |
229 | merge_dedup_splitbam | library:day80_ventricularCardiomyocyte_rep2 | COMPLETED | bc/be4bc6 | 4 | 129.5 | - | 0.4 | 41.088 GB | 2.333 GB | 44.161 GB | 2.359 GB | - | 1h 48m | 1h 48m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:09:28+00:00 | 219.616 GB | 211.940 GB | 49.740 MB | 32.515 MB | 10.059 GB | 9.453 GB | 1257105 | merge_dedup_splitbam (library:day80_ventricularCardiomyocyte_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/bc/be4bc602a23bf9b92f4f4441c8975b |
230 | merge_dedup_splitbam | library:day05_cardiacMesoderm_rep2 | COMPLETED | e5/c0a6a2 | 4 | 129.5 | - | 0.4 | 41.122 GB | 2.348 GB | 44.036 GB | 2.515 GB | - | 2h 30m | 2h 30m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:50:46+00:00 | 304.739 GB | 294.224 GB | 69.196 MB | 45.179 MB | 13.731 GB | 12.856 GB | 1256966 | merge_dedup_splitbam (library:day05_cardiacMesoderm_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/e5/c0a6a203708f2920c29896a3a36556 |
231 | merge_dedup_splitbam | library:day05_cardiacMesoderm_rep1 | COMPLETED | b9/c12e29 | 4 | 129.5 | - | 0.4 | 41.086 GB | 2.316 GB | 44.036 GB | 2.423 GB | - | 2h 4m | 2h 4m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:25:20+00:00 | 252.719 GB | 243.571 GB | 57.545 MB | 37.369 MB | 11.622 GB | 10.855 GB | 1257071 | merge_dedup_splitbam (library:day05_cardiacMesoderm_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/b9/c12e291706cb12a1b6cf42e8f2eae0 |
232 | merge_dedup_splitbam | library:day15_primativeCardiomyocyte_rep1 | COMPLETED | 33/5db9b6 | 4 | 130.7 | - | 0.4 | 41.080 GB | 2.359 GB | 43.974 GB | 2.395 GB | - | 1h 18m | 1h 18m |
| 0 | 2024-03-07T04:53:05+00:00 | 2024-03-07T04:53:05+00:00 | 2024-03-07T06:11:45+00:00 | 160.736 GB | 154.677 GB | 36.919 MB | 23.716 MB | 7.442 GB | 6.987 GB | 3366930 | merge_dedup_splitbam (library:day15_primativeCardiomyocyte_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/33/5db9b66172844502df8086c51ef68f |
233 | merge_dedup_splitbam | library:day07_cardiacProgenitor_rep1 | COMPLETED | 10/ffac8b | 4 | 129.5 | - | 0.4 | 41.096 GB | 2.329 GB | 44.161 GB | 2.357 GB | - | 2h 0m | 2h 0m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:20:59+00:00 | 243.546 GB | 234.688 GB | 55.568 MB | 36.000 MB | 11.175 GB | 10.498 GB | 1257017 | merge_dedup_splitbam (library:day07_cardiacProgenitor_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/10/ffac8b2fb3c04c820f25dc72382479 |
234 | merge_dedup_splitbam | library:day15_primativeCardiomyocyte_rep2 | COMPLETED | 1b/a3a59c | 4 | 129.3 | - | 0.4 | 41.111 GB | 2.406 GB | 44.036 GB | 2.442 GB | - | 2h 21m | 2h 21m |
| 0 | 2024-03-07T05:04:42+00:00 | 2024-03-07T05:04:42+00:00 | 2024-03-07T07:26:29+00:00 | 276.927 GB | 267.515 GB | 62.945 MB | 41.106 MB | 12.868 GB | 11.500 GB | 3648980 | merge_dedup_splitbam (library:day15_primativeCardiomyocyte_rep2) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/1b/a3a59cefedaf503c74e1b970549467 |
235 | merge_dedup_splitbam | library:day02_mesoderm_rep1 | COMPLETED | 7c/45ee1e | 4 | 129.1 | - | 0.3 | 20.825 GB | 1.405 GB | 22.240 GB | 1.405 GB | - | 1h 50m | 1h 50m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:10:54+00:00 | 134.822 GB | 127.245 GB | 18.964 MB | 8.299 MB | 9.959 GB | 10.564 GB | 1256845 | merge_dedup_splitbam (library:day02_mesoderm_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/7c/45ee1e3a5439be0380427386a5cb6a |
236 | merge_dedup_splitbam | library:day00_ESC_rep1 | COMPLETED | 61/c1efac | 4 | 129.4 | - | 0.2 | 20.797 GB | 1.180 GB | 22.365 GB | 1.180 GB | - | 1h 32m | 1h 32m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T04:53:05+00:00 | 113.658 GB | 106.965 GB | 16.142 MB | 6.971 MB | 8.603 GB | 8.957 GB | 1256853 | merge_dedup_splitbam (library:day00_ESC_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/61/c1efac7baef4284fbb2f6cea568449 |
237 | merge_dedup_splitbam | library:day80_ventricularCardiomyocyte_rep1 | COMPLETED | 8b/80066e | 4 | 129.4 | - | 0.3 | 20.797 GB | 1.438 GB | 22.303 GB | 1.438 GB | - | 1h 44m | 1h 44m |
| 0 | 2024-03-07T03:20:31+00:00 | 2024-03-07T03:20:31+00:00 | 2024-03-07T05:04:42+00:00 | 128.084 GB | 121.506 GB | 17.311 MB | 7.916 MB | 9.328 GB | 10.251 GB | 1256864 | merge_dedup_splitbam (library:day80_ventricularCardiomyocyte_rep1) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/8b/80066ee3f4da48b2d6f10f444b1bc6 |
238 | bin_zoom_library_pairs | library:day00_ESC_rep1 filter:no_filter | COMPLETED | f8/d6da22 | 8 | 393.6 | - | 3.6 | 180.098 GB | 18.355 GB | 192.739 GB | 30.008 GB | - | 3h 0m | 3h 0m |
| 0 | 2024-03-07T05:10:54+00:00 | 2024-03-07T05:10:54+00:00 | 2024-03-07T08:11:19+00:00 | 2.881 TB | 2.479 TB | 160.590 MB | 2.839 MB | 432.519 GB | 10.962 GB | 3802913 | bin_zoom_library_pairs (library:day00_ESC_rep1 filter:no_filter) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/f8/d6da22cc3796edb51b48d912724078 |
239 | bin_zoom_library_pairs | library:day00_ESC_rep1 filter:mapq_30 | COMPLETED | 8f/3af340 | 8 | 380.0 | - | 3.4 | 180.151 GB | 17.362 GB | 192.758 GB | 29.998 GB | - | 3h 6m | 3h 6m |
| 0 | 2024-03-07T05:25:20+00:00 | 2024-03-07T05:25:20+00:00 | 2024-03-07T08:32:09+00:00 | 2.754 TB | 2.377 TB | 158.839 MB | 6.659 MB | 399.528 GB | 10.044 GB | 4038769 | bin_zoom_library_pairs (library:day00_ESC_rep1 filter:mapq_30) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/8f/3af34089b463cea41a68939da8c8b6 |
240 | bin_zoom_library_pairs | library:day80_ventricularCardiomyocyte_rep1 filter:no_filter | COMPLETED | 97/72a7cd | 8 | 377.7 | - | 3.7 | 181.230 GB | 18.678 GB | 192.865 GB | 30.594 GB | - | 2h 44m | 2h 44m |
| 0 | 2024-03-07T05:50:46+00:00 | 2024-03-07T05:50:46+00:00 | 2024-03-07T08:35:28+00:00 | 2.226 TB | 1.882 TB | 135.845 MB | 3.209 MB | 368.513 GB | 12.785 GB | 53824 | bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep1 filter:no_filter) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/97/72a7cd0fa417b4ae7ca964912ff036 |
241 | bin_zoom_library_pairs | library:day80_ventricularCardiomyocyte_rep1 filter:mapq_30 | COMPLETED | 97/9cc9d1 | 8 | 359.9 | - | 3.5 | 181.467 GB | 17.870 GB | 192.926 GB | 30.160 GB | - | 2h 46m | 2h 46m |
| 0 | 2024-03-07T05:35:45+00:00 | 2024-03-07T05:35:45+00:00 | 2024-03-07T08:22:12+00:00 | 2.069 TB | 1.756 TB | 130.724 MB | 7.073 MB | 342.383 GB | 11.712 GB | 4144319 | bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep1 filter:mapq_30) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/97/9cc9d1ce9cb54bad7dc71b5072db68 |
242 | bin_zoom_library_pairs | library:day80_ventricularCardiomyocyte_rep2 filter:no_filter | COMPLETED | ef/817575 | 8 | 371.5 | - | 3.5 | 179.393 GB | 17.734 GB | 192.889 GB | 30.165 GB | - | 2h 33m | 2h 33m |
| 0 | 2024-03-07T08:11:19+00:00 | 2024-03-07T08:11:19+00:00 | 2024-03-07T10:44:33+00:00 | 2.006 TB | 1.688 TB | 124.998 MB | 3.056 MB | 338.990 GB | 12.251 GB | 547805 | bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep2 filter:no_filter) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/ef/8175758d86fc7ec18ef3cff8ffdb32 |
243 | bin_zoom_library_pairs | library:day80_ventricularCardiomyocyte_rep2 filter:mapq_30 | COMPLETED | 18/44190a | 8 | 341.2 | - | 5.0 | 182.384 GB | 25.072 GB | 192.870 GB | 30.167 GB | - | 2h 31m | 2h 31m |
| 0 | 2024-03-07T07:26:29+00:00 | 2024-03-07T07:26:29+00:00 | 2024-03-07T09:58:28+00:00 | 1.897 TB | 1.604 TB | 121.453 MB | 6.660 MB | 316.036 GB | 11.252 GB | 431944 | bin_zoom_library_pairs (library:day80_ventricularCardiomyocyte_rep2 filter:mapq_30) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/18/44190a43e1eb673e62b51a432a259d |
244 | bin_zoom_library_pairs | library:day02_mesoderm_rep1 filter:no_filter | COMPLETED | f0/bc9a39 | 8 | 404.8 | - | 4.1 | 181.906 GB | 20.525 GB | 192.712 GB | 34.092 GB | - | 3h 32m | 3h 32m |
| 0 | 2024-03-07T08:22:12+00:00 | 2024-03-07T08:22:12+00:00 | 2024-03-07T11:54:25+00:00 | 3.337 TB | 2.852 TB | 194.618 MB | 3.297 MB | 522.437 GB | 12.649 GB | 578733 | bin_zoom_library_pairs (library:day02_mesoderm_rep1 filter:no_filter) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/f0/bc9a3979ad763b2156161e9f2d32f3 |
245 | bin_zoom_library_pairs | library:day02_mesoderm_rep1 filter:mapq_30 | COMPLETED | 87/0cecd1 | 8 | 378.8 | - | 3.8 | 182.585 GB | 19.312 GB | 192.718 GB | 31.824 GB | - | 3h 42m | 3h 42m |
| 0 | 2024-03-07T08:32:09+00:00 | 2024-03-07T08:32:09+00:00 | 2024-03-07T12:15:05+00:00 | 3.154 TB | 2.711 TB | 197.186 MB | 7.751 MB | 470.092 GB | 11.607 GB | 606387 | bin_zoom_library_pairs (library:day02_mesoderm_rep1 filter:mapq_30) | - | open2c/distiller_env:0.3.4 | - | 1 | - | /net/users/reimonnt/Cardiac_HiC_PRJNA480492/distiller-nf/work/87/0cecd1819cb2413964a53b36370d62 |