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  nf-core/cutandrun vv3.1-g42502fb
----------------------------------------------------
Run Name: mad_becquerel

## nf-core/cutandrun execution completed successfully! ##


The workflow was completed at 2023-06-15T12:00:21.987564-04:00 (duration: 1h 52m 29s)

The command used to launch the workflow was as follows:

  nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /data/docker/gng/2023-06-14_cutandrun_batch3/sample_sheet.csv --outdir /data/docker/gng/2023-06-14_cutandrun_batch3/output --fasta /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB



Pipeline Configuration:
-----------------------
 - revision: 3.1
 - runName: mad_becquerel
 - containerEngine: docker
 - launchDir: /data/docker/gng/2023-06-14_cutandrun_batch3
 - workDir: /data/docker/gng/2023-06-14_cutandrun_batch3/work
 - projectDir: /home/gng/.nextflow/assets/nf-core/cutandrun
 - userName: gng
 - profile: docker
 - configFiles: /home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
 - input: /data/docker/gng/2023-06-14_cutandrun_batch3/sample_sheet.csv
 - outdir: /data/docker/gng/2023-06-14_cutandrun_batch3/output
 - bowtie2: /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
 - gtf: /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf
 - spikein_bowtie2: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
 - spikein_fasta: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
 - fasta: /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
 - igenomes_base: s3://ngi-igenomes/igenomes/
 - skip_heatmaps: true
 - minimum_alignment_q_score: 20
 - normalisation_binsize: 50
 - peakcaller: macs2
 - max_memory: 400.GB
 - Date Started: 2023-06-15T10:07:52.494820-04:00
 - Date Completed: 2023-06-15T12:00:21.987564-04:00
 - Pipeline script file path: /home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
 - Pipeline script hash ID: 933b3071ca6a81e9c2fc3c1dd6fa5968
 - Pipeline repository Git URL: https://github.com/nf-core/cutandrun
 - Pipeline repository Git Commit: 42502fb44975e930eec865353c5481f472bcf766
 - Pipeline Git branch/tag: 3.1
 - Nextflow Version: 22.10.7
 - Nextflow Build: 5853
 - Nextflow Compile Timestamp: 18-02-2023 20:32 UTC

--
nf-core/cutandrun
https://github.com/nf-core/cutandrun