nf-core/cutandrun vv3.1-g42502fb

Run Name: mad_becquerel

nf-core/cutandrun execution completed successfully!

The workflow was completed at 2023-06-15T12:00:21.987564-04:00 (duration: 1h 52m 29s)

The command used to launch the workflow was as follows:

nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /data/docker/gng/2023-06-14_cutandrun_batch3/sample_sheet.csv --outdir /data/docker/gng/2023-06-14_cutandrun_batch3/output --fasta /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB

Pipeline Configuration:

revision
3.1
runName
mad_becquerel
containerEngine
docker
launchDir
/data/docker/gng/2023-06-14_cutandrun_batch3
workDir
/data/docker/gng/2023-06-14_cutandrun_batch3/work
projectDir
/home/gng/.nextflow/assets/nf-core/cutandrun
userName
gng
profile
docker
configFiles
/home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
input
/data/docker/gng/2023-06-14_cutandrun_batch3/sample_sheet.csv
outdir
/data/docker/gng/2023-06-14_cutandrun_batch3/output
bowtie2
/data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
gtf
/data/genomes/ncbi/GRCh38.analysisSet/genes.gtf
spikein_bowtie2
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
spikein_fasta
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
fasta
/data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
igenomes_base
s3://ngi-igenomes/igenomes/
skip_heatmaps
true
minimum_alignment_q_score
20
normalisation_binsize
50
peakcaller
macs2
max_memory
400.GB
Date Started
2023-06-15T10:07:52.494820-04:00
Date Completed
2023-06-15T12:00:21.987564-04:00
Pipeline script file path
/home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
Pipeline script hash ID
933b3071ca6a81e9c2fc3c1dd6fa5968
Pipeline repository Git URL
https://github.com/nf-core/cutandrun
Pipeline repository Git Commit
42502fb44975e930eec865353c5481f472bcf766
Pipeline Git branch/tag
3.1
Nextflow Version
22.10.7
Nextflow Build
5853
Nextflow Compile Timestamp
18-02-2023 20:32 UTC

nf-core/cutandrun

https://github.com/nf-core/cutandrun