----------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~\
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/cutandrun vv3.1-g42502fb
----------------------------------------------------
Run Name: nasty_shannon

####################################################
## nf-core/cutandrun execution completed unsuccessfully! ##
####################################################
The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:

Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)'

Caused by:
  Process `NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)` terminated with an error exit status (1)

Command executed:

  check_samplesheet.py sample_sheet.csv samplesheet.valid.csv true
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK":
      python: $(python --version | grep -E -o "([0-9]{1,}\.)+[0-9]{1,}")
  END_VERSIONS

Command exit status:
  1

Command output:
  ERROR: Please check samplesheet -> Control entry and sample entry must be different!
  Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'

Command error:
  ERROR: Please check samplesheet -> Control entry and sample entry must be different!
  Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'

Work dir:
  /home/gng/cutandrun_h1_batch2/work/3b/3382554f96db295f4053b2284f0383

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`



The workflow was completed at 2023-05-26T17:39:39.216354-04:00 (duration: 1m 31s)

The command used to launch the workflow was as follows:

  nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/cutandrun_h1_batch2/sample_sheet.csv --outdir /home/gng/cutandrun_h1_batch2/ --fasta /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB



Pipeline Configuration:
-----------------------
 - revision: 3.1
 - runName: nasty_shannon
 - containerEngine: docker
 - launchDir: /home/gng/cutandrun_h1_batch2
 - workDir: /home/gng/cutandrun_h1_batch2/work
 - projectDir: /home/gng/.nextflow/assets/nf-core/cutandrun
 - userName: gng
 - profile: docker
 - configFiles: /home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
 - input: /home/gng/cutandrun_h1_batch2/sample_sheet.csv
 - outdir: /home/gng/cutandrun_h1_batch2/
 - bowtie2: /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
 - gtf: /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf
 - spikein_bowtie2: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
 - spikein_fasta: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
 - fasta: /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
 - igenomes_base: s3://ngi-igenomes/igenomes/
 - skip_heatmaps: true
 - minimum_alignment_q_score: 20
 - normalisation_binsize: 50
 - peakcaller: macs2
 - max_memory: 400.GB
 - Date Started: 2023-05-26T17:38:08.009694-04:00
 - Date Completed: 2023-05-26T17:39:39.216354-04:00
 - Pipeline script file path: /home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
 - Pipeline script hash ID: 933b3071ca6a81e9c2fc3c1dd6fa5968
 - Pipeline repository Git URL: https://github.com/nf-core/cutandrun
 - Pipeline repository Git Commit: 42502fb44975e930eec865353c5481f472bcf766
 - Pipeline Git branch/tag: 3.1
 - Nextflow Version: 22.10.7
 - Nextflow Build: 5853
 - Nextflow Compile Timestamp: 18-02-2023 20:32 UTC

--
nf-core/cutandrun
https://github.com/nf-core/cutandrun