nf-core/cutandrun vv3.1-g42502fb
Run Name: nasty_shannon
nf-core/cutandrun execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:
Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)'
Caused by:
Process `NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)` terminated with an error exit status (1)
Command executed:
check_samplesheet.py sample_sheet.csv samplesheet.valid.csv true
cat <<-END_VERSIONS > versions.yml
"NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK":
python: $(python --version | grep -E -o "([0-9]{1,}\.)+[0-9]{1,}")
END_VERSIONS
Command exit status:
1
Command output:
ERROR: Please check samplesheet -> Control entry and sample entry must be different!
Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'
Command error:
ERROR: Please check samplesheet -> Control entry and sample entry must be different!
Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'
Work dir:
/home/gng/cutandrun_h1_batch2/work/3b/3382554f96db295f4053b2284f0383
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
The workflow was completed at 2023-05-26T17:39:39.216354-04:00 (duration: 1m 31s)
The command used to launch the workflow was as follows:
nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/cutandrun_h1_batch2/sample_sheet.csv --outdir /home/gng/cutandrun_h1_batch2/ --fasta /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB
Pipeline Configuration:
| revision | 3.1 |
|---|---|
| runName | nasty_shannon |
| containerEngine | docker |
| launchDir | /home/gng/cutandrun_h1_batch2 |
| workDir | /home/gng/cutandrun_h1_batch2/work |
| projectDir | /home/gng/.nextflow/assets/nf-core/cutandrun |
| userName | gng |
| profile | docker |
| configFiles | /home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config |
| input | /home/gng/cutandrun_h1_batch2/sample_sheet.csv |
| outdir | /home/gng/cutandrun_h1_batch2/ |
| bowtie2 | /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz |
| gtf | /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf |
| spikein_bowtie2 | s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/ |
| spikein_fasta | s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa |
| fasta | /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz |
| igenomes_base | s3://ngi-igenomes/igenomes/ |
| skip_heatmaps | true |
| minimum_alignment_q_score | 20 |
| normalisation_binsize | 50 |
| peakcaller | macs2 |
| max_memory | 400.GB |
| Date Started | 2023-05-26T17:38:08.009694-04:00 |
| Date Completed | 2023-05-26T17:39:39.216354-04:00 |
| Pipeline script file path | /home/gng/.nextflow/assets/nf-core/cutandrun/main.nf |
| Pipeline script hash ID | 933b3071ca6a81e9c2fc3c1dd6fa5968 |
| Pipeline repository Git URL | https://github.com/nf-core/cutandrun |
| Pipeline repository Git Commit | 42502fb44975e930eec865353c5481f472bcf766 |
| Pipeline Git branch/tag | 3.1 |
| Nextflow Version | 22.10.7 |
| Nextflow Build | 5853 |
| Nextflow Compile Timestamp | 18-02-2023 20:32 UTC |
nf-core/cutandrun