nf-core/cutandrun vv3.1-g42502fb

Run Name: nasty_shannon

nf-core/cutandrun execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)'

Caused by:
  Process `NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK (sample_sheet.csv)` terminated with an error exit status (1)

Command executed:

  check_samplesheet.py sample_sheet.csv samplesheet.valid.csv true
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CUTANDRUN:CUTANDRUN:INPUT_CHECK:SAMPLESHEET_CHECK":
      python: $(python --version | grep -E -o "([0-9]{1,}\.)+[0-9]{1,}")
  END_VERSIONS

Command exit status:
  1

Command output:
  ERROR: Please check samplesheet -> Control entry and sample entry must be different!
  Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'

Command error:
  ERROR: Please check samplesheet -> Control entry and sample entry must be different!
  Line: 'IgG,1,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R1_001.fastq.gz,/data/abdenlab/share/4dn2csg/cut2run_batch2/CutnRun_H1_IgG_S1_L001_R2_001.fastq.gz,IgG'

Work dir:
  /home/gng/cutandrun_h1_batch2/work/3b/3382554f96db295f4053b2284f0383

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`

The workflow was completed at 2023-05-26T17:39:39.216354-04:00 (duration: 1m 31s)

The command used to launch the workflow was as follows:

nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/cutandrun_h1_batch2/sample_sheet.csv --outdir /home/gng/cutandrun_h1_batch2/ --fasta /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /data/genomes/ncbi/GRCh38.analysisSet/genes.gtf --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB

Pipeline Configuration:

revision
3.1
runName
nasty_shannon
containerEngine
docker
launchDir
/home/gng/cutandrun_h1_batch2
workDir
/home/gng/cutandrun_h1_batch2/work
projectDir
/home/gng/.nextflow/assets/nf-core/cutandrun
userName
gng
profile
docker
configFiles
/home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
input
/home/gng/cutandrun_h1_batch2/sample_sheet.csv
outdir
/home/gng/cutandrun_h1_batch2/
bowtie2
/data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
gtf
/data/genomes/ncbi/GRCh38.analysisSet/genes.gtf
spikein_bowtie2
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
spikein_fasta
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
fasta
/data/genomes/ncbi/GRCh38.analysisSet/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
igenomes_base
s3://ngi-igenomes/igenomes/
skip_heatmaps
true
minimum_alignment_q_score
20
normalisation_binsize
50
peakcaller
macs2
max_memory
400.GB
Date Started
2023-05-26T17:38:08.009694-04:00
Date Completed
2023-05-26T17:39:39.216354-04:00
Pipeline script file path
/home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
Pipeline script hash ID
933b3071ca6a81e9c2fc3c1dd6fa5968
Pipeline repository Git URL
https://github.com/nf-core/cutandrun
Pipeline repository Git Commit
42502fb44975e930eec865353c5481f472bcf766
Pipeline Git branch/tag
3.1
Nextflow Version
22.10.7
Nextflow Build
5853
Nextflow Compile Timestamp
18-02-2023 20:32 UTC

nf-core/cutandrun

https://github.com/nf-core/cutandrun