----------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~\
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/cutandrun vv3.1-g42502fb
----------------------------------------------------
Run Name: fabulous_faggin

## nf-core/cutandrun execution completed successfully! ##


The workflow was completed at 2023-04-12T17:04:00.203744Z (duration: 2h 24m 39s)

The command used to launch the workflow was as follows:

  nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv --outdir /home/gng/h1-cutandrun/output --fasta /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB -resume



Pipeline Configuration:
-----------------------
 - revision: 3.1
 - runName: fabulous_faggin
 - containerEngine: docker
 - launchDir: /home/gng/h1-cutandrun
 - workDir: /home/gng/h1-cutandrun/work
 - projectDir: /home/gng/.nextflow/assets/nf-core/cutandrun
 - userName: gng
 - profile: docker
 - configFiles: /home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
 - input: /home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv
 - outdir: /home/gng/h1-cutandrun/output
 - bowtie2: /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
 - gtf: /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz
 - spikein_bowtie2: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
 - spikein_fasta: s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
 - fasta: /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
 - igenomes_base: s3://ngi-igenomes/igenomes/
 - skip_heatmaps: true
 - minimum_alignment_q_score: 20
 - normalisation_binsize: 50
 - peakcaller: macs2
 - max_memory: 400.GB
 - Date Started: 2023-04-12T14:39:21.340369Z
 - Date Completed: 2023-04-12T17:04:00.203744Z
 - Pipeline script file path: /home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
 - Pipeline script hash ID: 933b3071ca6a81e9c2fc3c1dd6fa5968
 - Pipeline repository Git URL: https://github.com/nf-core/cutandrun
 - Pipeline repository Git Commit: 42502fb44975e930eec865353c5481f472bcf766
 - Pipeline Git branch/tag: 3.1
 - Nextflow Version: 22.10.7
 - Nextflow Build: 5853
 - Nextflow Compile Timestamp: 18-02-2023 20:32 UTC

--
nf-core/cutandrun
https://github.com/nf-core/cutandrun