nf-core/cutandrun vv3.1-g42502fb

Run Name: fabulous_faggin

nf-core/cutandrun execution completed successfully!

The workflow was completed at 2023-04-12T17:04:00.203744Z (duration: 2h 24m 39s)

The command used to launch the workflow was as follows:

nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv --outdir /home/gng/h1-cutandrun/output --fasta /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB -resume

Pipeline Configuration:

revision
3.1
runName
fabulous_faggin
containerEngine
docker
launchDir
/home/gng/h1-cutandrun
workDir
/home/gng/h1-cutandrun/work
projectDir
/home/gng/.nextflow/assets/nf-core/cutandrun
userName
gng
profile
docker
configFiles
/home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config
input
/home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv
outdir
/home/gng/h1-cutandrun/output
bowtie2
/home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz
gtf
/home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz
spikein_bowtie2
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/
spikein_fasta
s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa
fasta
/home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz
igenomes_base
s3://ngi-igenomes/igenomes/
skip_heatmaps
true
minimum_alignment_q_score
20
normalisation_binsize
50
peakcaller
macs2
max_memory
400.GB
Date Started
2023-04-12T14:39:21.340369Z
Date Completed
2023-04-12T17:04:00.203744Z
Pipeline script file path
/home/gng/.nextflow/assets/nf-core/cutandrun/main.nf
Pipeline script hash ID
933b3071ca6a81e9c2fc3c1dd6fa5968
Pipeline repository Git URL
https://github.com/nf-core/cutandrun
Pipeline repository Git Commit
42502fb44975e930eec865353c5481f472bcf766
Pipeline Git branch/tag
3.1
Nextflow Version
22.10.7
Nextflow Build
5853
Nextflow Compile Timestamp
18-02-2023 20:32 UTC

nf-core/cutandrun

https://github.com/nf-core/cutandrun