nf-core/cutandrun vv3.1-g42502fb
Run Name: fabulous_faggin
nf-core/cutandrun execution completed successfully!
The workflow was completed at 2023-04-12T17:04:00.203744Z (duration: 2h 24m 39s)
The command used to launch the workflow was as follows:
nextflow run nf-core/cutandrun -r 3.1 -profile docker --input /home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv --outdir /home/gng/h1-cutandrun/output --fasta /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz --bowtie2 /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz --gtf /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz --peakcaller macs2 --skip_heatmaps true --max_memory 400.GB -resume
Pipeline Configuration:
| revision | 3.1 |
|---|---|
| runName | fabulous_faggin |
| containerEngine | docker |
| launchDir | /home/gng/h1-cutandrun |
| workDir | /home/gng/h1-cutandrun/work |
| projectDir | /home/gng/.nextflow/assets/nf-core/cutandrun |
| userName | gng |
| profile | docker |
| configFiles | /home/gng/.nextflow/assets/nf-core/cutandrun/nextflow.config |
| input | /home/gng/h1-cutandrun/datasets/cnr_cleaned/sample_sheet.csv |
| outdir | /home/gng/h1-cutandrun/output |
| bowtie2 | /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.bowtie_index.tar.gz |
| gtf | /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz |
| spikein_bowtie2 | s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/Bowtie2Index/ |
| spikein_fasta | s3://ngi-igenomes/igenomes//Escherichia_coli_K_12_MG1655/NCBI/2001-10-15/Sequence/WholeGenomeFasta/genome.fa |
| fasta | /home/gng/h1-cutandrun/datasets/references/GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.gz |
| igenomes_base | s3://ngi-igenomes/igenomes/ |
| skip_heatmaps | true |
| minimum_alignment_q_score | 20 |
| normalisation_binsize | 50 |
| peakcaller | macs2 |
| max_memory | 400.GB |
| Date Started | 2023-04-12T14:39:21.340369Z |
| Date Completed | 2023-04-12T17:04:00.203744Z |
| Pipeline script file path | /home/gng/.nextflow/assets/nf-core/cutandrun/main.nf |
| Pipeline script hash ID | 933b3071ca6a81e9c2fc3c1dd6fa5968 |
| Pipeline repository Git URL | https://github.com/nf-core/cutandrun |
| Pipeline repository Git Commit | 42502fb44975e930eec865353c5481f472bcf766 |
| Pipeline Git branch/tag | 3.1 |
| Nextflow Version | 22.10.7 |
| Nextflow Build | 5853 |
| Nextflow Compile Timestamp | 18-02-2023 20:32 UTC |
nf-core/cutandrun